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Prediction of Short Linear Protein Binding Regions

Journal of molecular biology, 2012-01, Vol.415 (1), p.193-204

2012

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PeptideLocator: prediction of bioactive peptides in protein sequences

Bioinformatics, 2013-05, Vol.29 (9), p.1120-1126

2013

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Profile-based short linear protein motif discovery

BMC bioinformatics, 2012-05, Vol.13 (1), p.104-104, Article 104

2012

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SLiMSearch 2.0: biological context for short linear motifs in proteins

Nucleic acids research, 2011-07, Vol.39 (Web Server issue), p.W56-W60

2011

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Evaluating caveolin interactions: do proteins interact with the caveolin scaffolding domain through a widespread aromatic residue-rich motif?

PloS one, 2012-09, Vol.7 (9), p.e44879-e44879

2012

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SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W534-W539

2010

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Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs

PloS one, 2013-03, Vol.8 (3), p.e58126-e58126

2013

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PMeS: prediction of methylation sites based on enhanced feature encoding scheme

PloS one, 2012-06, Vol.7 (6), p.e38772-e38772

2012

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VENNTURE--a novel Venn diagram investigational tool for multiple pharmacological dataset analysis

PloS one, 2012-05, Vol.7 (5), p.e36911

2012

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SLiMScape: a protein short linear motif analysis plugin for Cytoscape

BMC bioinformatics, 2013-07, Vol.14 (1), p.224-224, Article 224

2013

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The molecular basis for the broad substrate specificity of human sulfotransferase 1A1

PloS one, 2011-11, Vol.6 (11), p.e26794

2011

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NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data

PloS one, 2011-11, Vol.6 (11), p.e26781-e26781

2011

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Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotes

PloS one, 2010-08, Vol.5 (8), p.e12069-e12069

2010

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Prediction of molecular targets of cancer preventing flavonoid compounds using computational methods

PloS one, 2012-05, Vol.7 (5), p.e38261

2012

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EpiC: An Open Resource for Exploring Epitopes To Aid Antibody-Based Experiments

Journal of proteome research, 2010-07, Vol.9 (7), p.3759-3763

2010

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Mining GO annotations for improving annotation consistency

PloS one, 2012-07, Vol.7 (7), p.e40519-e40519

2012

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DoReMi: context-based prioritization of linear motif matches

PeerJ (San Francisco, CA), 2014-03, Vol.2, p.e315-e315

2014

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Genometa--a fast and accurate classifier for short metagenomic shotgun reads

PloS one, 2012-08, Vol.7 (8), p.e41224-e41224

2012

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vProtein: identifying optimal amino acid complements from plant-based foods

PloS one, 2011-04, Vol.6 (4), p.e18836-e18836

2011

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Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes

PloS one, 2008-06, Vol.3 (6), p.e2500-e2500

2008

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Disordered patterns in clustered Protein Data Bank and in eukaryotic and bacterial proteomes

PloS one, 2011-11, Vol.6 (11), p.e27142-e27142

2011

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3D printed composite materials for craniofacial implants: current concepts, challenges and future directions

International journal of advanced manufacturing technology, 2021, Vol.112 (3-4), p.635-653

2021

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GOPred: GO molecular function prediction by combined classifiers

PloS one, 2010-08, Vol.5 (8), p.e12382-e12382

2010

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Of bits and bugs--on the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure

PloS one, 2010-10, Vol.5 (10), p.e13402-e13402

2010

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Prediction of Short Linear Protein Binding Regions

PeptideLocator: prediction of bioactive peptides in protein sequences

Profile-based short linear protein motif discovery

SLiMSearch 2.0: biological context for short linear motifs in proteins

Evaluating caveolin interactions: do proteins interact with the caveolin scaffolding domain through a widespread aromatic residue-rich motif?

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs

PMeS: prediction of methylation sites based on enhanced feature encoding scheme

VENNTURE--a novel Venn diagram investigational tool for multiple pharmacological dataset analysis

SLiMScape: a protein short linear motif analysis plugin for Cytoscape

The molecular basis for the broad substrate specificity of human sulfotransferase 1A1

NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data

Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotes

Prediction of molecular targets of cancer preventing flavonoid compounds using computational methods

EpiC: An Open Resource for Exploring Epitopes To Aid Antibody-Based Experiments

Mining GO annotations for improving annotation consistency

DoReMi: context-based prioritization of linear motif matches

Genometa--a fast and accurate classifier for short metagenomic shotgun reads

vProtein: identifying optimal amino acid complements from plant-based foods

Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes

A Community Standard Format for the Representation of Protein Affinity Reagents

Disordered patterns in clustered Protein Data Bank and in eukaryotic and bacterial proteomes

3D printed composite materials for craniofacial implants: current concepts, challenges and future directions

GOPred: GO molecular function prediction by combined classifiers

Of bits and bugs--on the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure

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