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Network analyses reveal pervasive functional regulation between proteases in the human protease web

PLoS biology, 2014-05, Vol.12 (5), p.e1001869-e1001869

2014

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C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease

Nature communications, 2018-06, Vol.9 (1), p.2416-18, Article 2416

2018

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The Peri-islet Basement Membrane, a Barrier to Infiltrating Leukocytes in Type 1 Diabetes in Mouse and Human

Diabetes (New York, N.Y.), 2013-02, Vol.62 (2), p.531-542

2013

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Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

Cell reports (Cambridge), 2014-10, Vol.9 (2), p.618-632

2014

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Matrix metalloproteinase 8 deficiency in mice exacerbates inflammatory arthritis through delayed neutrophil apoptosis and reduced caspase 11 expression

Arthritis & rheumatology (Hoboken, N.J.), 2010-12, Vol.62 (12), p.3645-3655

2010

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Novel Matrix Metalloproteinase Inhibitor [18F]Marimastat-Aryltrifluoroborate as a Probe for In vivo Positron Emission Tomography Imaging in Cancer

Cancer research (Chicago, Ill.), 2010-10, Vol.70 (19), p.7562-7569

2010

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Repression of Salmonella enterica phoP Expression by Small Molecules from Physiological Bile

Journal of Bacteriology, 2012-05, Vol.194 (9), p.2286-2296

2012

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Microarray and Proteomic Analysis of Breast Cancer Cell and Osteoblast Co-cultures

The Journal of biological chemistry, 2011-09, Vol.286 (39), p.34271-34285

2011

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Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14

Data in brief, 2016-06, Vol.7, p.299-310

2016

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Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome

Cell reports (Cambridge), 2021-10, Vol.37 (4)

2021

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Overview of transcriptomic analysis of all human proteases, non-proteolytic homologs and inhibitors: Organ, tissue and ovarian cancer cell line expression profiling of the human protease degradome by the CLIP-CHIP™ DNA microarray

Biochimica et biophysica acta. Molecular cell research, 2017-11, Vol.1864 (11), p.2210-2219

2017

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Microarray and proteomic analysis of breast cancer cell and osteoblast co-cultures: role of osteoblast matrix metalloproteinase (MMP)-13 in bone metastasis

The Journal of biological chemistry, 2011-09, Vol.286 (39), p.34271-34285

2011

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Optimization of quenched fluorescent peptide substrates of SARS-CoV-2 3CL pro main protease (Mpro) from proteomic identification of P6-P6' active site specificity

Journal of virology, 2024-06, Vol.98 (6), p.e0004924

2024

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Persistent Salmonella enterica Serovar Typhimurium Infection Induces Protease Expression During Intestinal Fibrosis

Inflammatory bowel diseases, 2019-10, Vol.25 (10), p.1629-1643

2019

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Proenzyme Structure and Activation of Astacin Metallopeptidase

The Journal of biological chemistry, 2010-04, Vol.285 (18), p.13958-13965

2010

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Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL pro substrate degradome

Cell reports (Cambridge), 2021-10, Vol.37 (4), p.109892

2021

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Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CLpro substrate degradome

Cell reports (Cambridge), 2021-10, Vol.37 (4), p.109892-109892, Article 109892

2021

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Novel grooved substrata stimulate macrophage fusion, CCL2 and MMP-9 secretion

Journal of biomedical materials research. Part A, 2016-09, Vol.104 (9), p.2243-2254

2016

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Proteases and their inhibitors as prognostic factors for high-grade serous ovarian cancer

Pathology, research and practice, 2019-06, Vol.215 (6), p.152369-152369, Article 152369

2019

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Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web: e1001869

PLoS biology, 2014-05, Vol.12 (5)

2014

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The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse

Current Protocols in Protein Science, 2009-04, Vol.56 (1), p.21.19.1-21.19.16

2009

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Protease degradomics: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors

Biological chemistry, 2004-06, Vol.385 (6), p.493-504

2004

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Repression of Salmonella entericaphoP Expression by Small Molecules from Physiological Bile

Journal of bacteriology, 2012-05, Vol.194 (9), p.2286

2012

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The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse

Current Protocols in Protein Science, 2007-08, Vol.49 (1), p.21.19.1-21.19.16

2007

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Analysis of the degradome with the CLIP-CHIP microarray

Methods in molecular biology (Clifton, N.J.), 2010, Vol.622, p.175

2010

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Network analyses reveal pervasive functional regulation between proteases in the human protease web

C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease

The Peri-islet Basement Membrane, a Barrier to Infiltrating Leukocytes in Type 1 Diabetes in Mouse and Human

Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

Matrix metalloproteinase 8 deficiency in mice exacerbates inflammatory arthritis through delayed neutrophil apoptosis and reduced caspase 11 expression

Novel Matrix Metalloproteinase Inhibitor [18F]Marimastat-Aryltrifluoroborate as a Probe for In vivo Positron Emission Tomography Imaging in Cancer

Repression of Salmonella enterica phoP Expression by Small Molecules from Physiological Bile

Microarray and Proteomic Analysis of Breast Cancer Cell and Osteoblast Co-cultures

Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14

Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome

Overview of transcriptomic analysis of all human proteases, non-proteolytic homologs and inhibitors: Organ, tissue and ovarian cancer cell line expression profiling of the human protease degradome by the CLIP-CHIP™ DNA microarray

Microarray and proteomic analysis of breast cancer cell and osteoblast co-cultures: role of osteoblast matrix metalloproteinase (MMP)-13 in bone metastasis

Optimization of quenched fluorescent peptide substrates of SARS-CoV-2 3CL pro main protease (Mpro) from proteomic identification of P6-P6' active site specificity

Persistent Salmonella enterica Serovar Typhimurium Infection Induces Protease Expression During Intestinal Fibrosis

Proenzyme Structure and Activation of Astacin Metallopeptidase

Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL pro substrate degradome

Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CLpro substrate degradome

Novel grooved substrata stimulate macrophage fusion, CCL2 and MMP-9 secretion

Proteases and their inhibitors as prognostic factors for high-grade serous ovarian cancer

Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web: e1001869

The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse

Protease degradomics: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors

Repression of Salmonella entericaphoP Expression by Small Molecules from Physiological Bile

The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse

Analysis of the degradome with the CLIP-CHIP microarray

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