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ShapeSorter : a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

Nucleic acids research, 2022-08, Vol.50 (15), p.e85-e85

2022

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R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

Nucleic acids research, 2020-10, Vol.48 (18), p.e105-e105

2020

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The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Nature communications, 2019-12, Vol.10 (1), p.5518-15, Article 5518

2019

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Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

Nucleic acids research, 2008-12, Vol.36 (22), p.6977-6987

2008

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e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features

Nucleic acids research, 2023-07, Vol.51 (W1), p.W160-W167

2023

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CYCLeR-a novel tool for the full isoform assembly and quantification of circRNAs

Nucleic acids research, 2023-01, Vol.51 (2), p.e10-e10

2023

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In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression

Methods (San Diego, Calif.), 2017-05, Vol.120, p.3-16

Meyer, Irmtraud M.

2017

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TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures

PLoS computational biology, 2010-06, Vol.6 (6), p.e1000823-e1000823

2010

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The International Virus Bioinformatics Meeting 2020

Viruses, 2020-12, Vol.12 (12), p.1398

2020

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CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

Nucleic acids research, 2021-02, Vol.49 (4), p.e19-e19

2021

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Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

RNA biology, 2015-01, Vol.12 (12), p.1391-1401

2015

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A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Development (Cambridge), 2019-03, Vol.146 (6)

2019

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Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis

RNA biology, 2019-01, Vol.16 (1), p.69-81

2019

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Predicting novel RNA–RNA interactions

Current opinion in structural biology, 2008-06, Vol.18 (3), p.387-393

Meyer, Irmtraud M

2008

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Transient RNA structure features are evolutionarily conserved and can be computationally predicted

Nucleic acids research, 2013-07, Vol.41 (12), p.6273-6285

2013

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The hok mRNA family

RNA biology, 2012-12, Vol.9 (12), p.1399-1404

2012

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Four RNA families with functional transient structures

RNA biology, 2015-01, Vol.12 (1), p.5-20

2015

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Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

Nucleic acids research, 2005-01, Vol.33 (19), p.6338-6348

2005

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Bacteriophages: Emerging Applications in Medicine, Food, and Biotechnology

PHAGE (Print), 2020-06, Vol.1 (2), p.75-82

2020

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A cross-species comparison of X-chromosome inactivation in Eutheria

Genomics (San Diego, Calif.), 2007-10, Vol.90 (4), p.453-463

2007

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The clonal and mutational evolution spectrum of primary triple―negative breast cancers

Nature (London), 2012-06, Vol.486 (7403), p.395-399

2012

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Frequent mutation of histone―modifying genes in non―Hodgkin lymphoma

Nature (London), 2011-08, Vol.476 (7360), p.298-303

2011

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C o F old : an RNA secondary structure prediction method that takes co-transcriptional folding into account

Nucleic acids research, 2013-05, Vol.41 (9), p.e102-e102

2013

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The hok mRNA family

RNA biology, 2012-12, Vol.9 (12), p.0-1

2012

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ShapeSorter : a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features

CYCLeR-a novel tool for the full isoform assembly and quantification of circRNAs

In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures

Women in the European Virus Bioinformatics Center

The International Virus Bioinformatics Meeting 2020

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis

Predicting novel RNA–RNA interactions

Transient RNA structure features are evolutionarily conserved and can be computationally predicted

The hok mRNA family

Four RNA families with functional transient structures

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

Bacteriophages: Emerging Applications in Medicine, Food, and Biotechnology

A cross-species comparison of X-chromosome inactivation in Eutheria

The clonal and mutational evolution spectrum of primary triple―negative breast cancers

Frequent mutation of histone―modifying genes in non―Hodgkin lymphoma

C o F old : an RNA secondary structure prediction method that takes co-transcriptional folding into account

The hok mRNA family

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