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Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

Frontiers in microbiology, 2017-09, Vol.8, p.1561-1561

2017

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Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

PloS one, 2010-03, Vol.5 (3), p.e9836-e9836

2010

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Binning metagenomic contigs by coverage and composition

Nature methods, 2014-11, Vol.11 (11), p.1144-1146

2014

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Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities

Science (American Association for the Advancement of Science), 2008-05, Vol.320 (5879), p.1047-1050

2008

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Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

The ISME Journal, 2011-10, Vol.5 (10), p.1571-1579

2011

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DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies

Applied and environmental microbiology, 2014-08, Vol.80 (16), p.5116-5123

2014

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Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

The ISME Journal, 2010-02, Vol.4 (2), p.171-181

2010

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Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

Nature communications, 2018-11, Vol.9 (1), p.5091-14, Article 5091

2018

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Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Frontiers in microbiology, 2017-05, Vol.8, p.738-738

2017

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Low diversity of the gut microbiota in infants with atopic eczema

Journal of allergy and clinical immunology, 2012-02, Vol.129 (2), p.434-440.e2

2012

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Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

PloS one, 2011-04, Vol.6 (4), p.e19223-e19223

2011

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Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea

Frontiers in microbiology, 2016-05, Vol.7, p.679-679

2016

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Evaluating metagenomic assembly approaches for biome-specific gene catalogues

Microbiome, 2022-05, Vol.10 (1), p.72-72, Article 72

2022

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Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

PloS one, 2014-04, Vol.9 (4), p.e95567-e95567

2014

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Active sulfur cycling in the terrestrial deep subsurface

The ISME Journal, 2020-05, Vol.14 (5), p.1260-1272

2020

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Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing

Molecular ecology resources, 2022-08, Vol.22 (6), p.2304-2318

2022

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Community-wide analysis of microbial genome sequence signatures

Genome Biology, 2009-01, Vol.10 (8), p.R85-R85

2009

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Ecologically coherent population structure of uncultivated bacterioplankton

The ISME Journal, 2021-10, Vol.15 (10), p.3034-3049

2021

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ASV portal: an interface to DNA-based biodiversity data in the Living Atlas

BMC bioinformatics, 2023-01, Vol.24 (1), p.6-6, Article 6

2023

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Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

Nature communications, 2016-10, Vol.7 (1), p.12770-12770, Article 12770

2016

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Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea

Frontiers in microbiology, 2016-11, Vol.7, p.1883-1883

2016

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Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

Environmental microbiology, 2015-07, Vol.17 (7), p.2459-2476

2015

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Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb

The New phytologist, 2018-12, Vol.220 (4), p.1248-1261

2018

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Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton

PloS one, 2024, Vol.19 (1), p.e0296672-e0296672

2024

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Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

The ISME Journal, 2013-07, Vol.7 (7), p.1413-1423

2013

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Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

Binning metagenomic contigs by coverage and composition

Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Low diversity of the gut microbiota in infants with atopic eczema

Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea

Evaluating metagenomic assembly approaches for biome-specific gene catalogues

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

Active sulfur cycling in the terrestrial deep subsurface

Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing

Community-wide analysis of microbial genome sequence signatures

Ecologically coherent population structure of uncultivated bacterioplankton

ASV portal: an interface to DNA-based biodiversity data in the Living Atlas

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb

Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

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