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Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

Molecular biology and evolution, 2016-11, Vol.33 (11), p.2860-2873

2016

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Prediction of antibiotic resistance: time for a new preclinical paradigm?

Nature reviews. Microbiology, 2017-11, Vol.15 (11), p.689-696

2017

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Forecasting the dissemination of antibiotic resistance genes across bacterial genomes

Nature communications, 2021-04, Vol.12 (1), p.2435-2435, Article 2435

2021

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Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Nature communications, 2017-06, Vol.8 (1), p.15784-15784, Article 15784

2017

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Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform

Nature communications, 2020-01, Vol.11 (1), p.95-95, Article 95

2020

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Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase

Nature communications, 2019-02, Vol.10 (1), p.618-10, Article 618

2019

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Prediction of resistance development against drug combinations by collateral responses to component drugs

Science translational medicine, 2014-11, Vol.6 (262), p.262ra156

2014

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Biochemical mechanisms determine the functional compatibility of heterologous genes

Nature communications, 2018-02, Vol.9 (1), p.522-11, Article 522

2018

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Collateral Resistance and Sensitivity Modulate Evolution of High-Level Resistance to Drug Combination Treatment in Staphylococcus aureus

Molecular biology and evolution, 2015-05, Vol.32 (5), p.1175-1185

2015

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Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Genotypes

Frontiers in microbiology, 2017-05, Vol.8, p.816-816

2017

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Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment

Frontiers in microbiology, 2017-09, Vol.8, p.1852-1852

2017

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Chromosomal barcoding as a tool for multiplexed phenotypic characterization of laboratory evolved lineages

Scientific reports, 2018-05, Vol.8 (1), p.6961-12, Article 6961

2018

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The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study

Critical care (London, England), 2020-07, Vol.24 (1), p.404-404, Article 404

2020

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Time-Resolved Tracking of Mutations Reveals Diverse Allele Dynamics during Escherichia coli Antimicrobial Adaptive Evolution to Single Drugs and Drug Pairs

Frontiers in microbiology, 2017-05, Vol.8, p.893-893

2017

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Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

PloS one, 2016-01, Vol.11 (1), p.e0147651-e0147651

2016

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Mutations in 23S rRNA at the Peptidyl Transferase Center and Their Relationship to Linezolid Binding and Cross-Resistance

Antimicrobial Agents and Chemotherapy, 2010-11, Vol.54 (11), p.4705-4713

2010

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Functional metagenomic investigations of the human intestinal microbiota

Frontiers in cellular and infection microbiology, 2011-01, Vol.2, p.188

2011

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Limited dissemination of the wastewater treatment plant core resistome

Nature communications, 2015-09, Vol.6 (1), p.8452-8452, Article 8452

2015

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Engineering living and regenerative fungal-bacterial biocomposite structures

Nature materials, 2022-04, Vol.21 (4), p.471-478

2022

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Short and long-read ultra-deep sequencing profiles emerging heterogeneity across five platform Escherichia coli strains

Metabolic engineering, 2021-05, Vol.65, p.197-206

2021

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598: SHORT-COURSE ICU ANTIBIOTICS DO NOT CHANGE GUT ANTIMICROBIAL RESISTANCE PHENOTYPE OR GENOTYPE

Critical care medicine, 2020-01, Vol.48 (1), p.279-279

2020

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Tu1908 EFFECT OF FIBER-BASED ENTERAL FEEDS ON THE GUT MICROBIOME OF ICU PATIENTS RECEIVING BROAD-SPECTRUM IV ANTIBIOTICS: A RANDOMIZED PILOT TRIAL

Gastroenterology (New York, N.Y. 1943), 2020-05, Vol.158 (6), p.S-1214-S-1214

2020

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Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiotain the Absence of Antibiotic Treatment

Frontiers in microbiology, 2017, Vol.8

2017

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Impact of Fiber-Based Enteral Nutrition on the Gut Microbiome of ICU Patients Receiving Broad-Spectrum Antibiotics: A Randomized Pilot Trial

Critical care explorations, 2020-06, Vol.2 (6), p.e0135-e0135

2020

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Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis: e0147651

PloS one, 2016-01, Vol.11 (1)

2016

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Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

Prediction of antibiotic resistance: time for a new preclinical paradigm?

Forecasting the dissemination of antibiotic resistance genes across bacterial genomes

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform

Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase

Prediction of resistance development against drug combinations by collateral responses to component drugs

Biochemical mechanisms determine the functional compatibility of heterologous genes

Collateral Resistance and Sensitivity Modulate Evolution of High-Level Resistance to Drug Combination Treatment in Staphylococcus aureus

Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Genotypes

Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment

Chromosomal barcoding as a tool for multiplexed phenotypic characterization of laboratory evolved lineages

The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study

Time-Resolved Tracking of Mutations Reveals Diverse Allele Dynamics during Escherichia coli Antimicrobial Adaptive Evolution to Single Drugs and Drug Pairs

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

Mutations in 23S rRNA at the Peptidyl Transferase Center and Their Relationship to Linezolid Binding and Cross-Resistance

Functional metagenomic investigations of the human intestinal microbiota

Limited dissemination of the wastewater treatment plant core resistome

Engineering living and regenerative fungal-bacterial biocomposite structures

Short and long-read ultra-deep sequencing profiles emerging heterogeneity across five platform Escherichia coli strains

598: SHORT-COURSE ICU ANTIBIOTICS DO NOT CHANGE GUT ANTIMICROBIAL RESISTANCE PHENOTYPE OR GENOTYPE

Tu1908 EFFECT OF FIBER-BASED ENTERAL FEEDS ON THE GUT MICROBIOME OF ICU PATIENTS RECEIVING BROAD-SPECTRUM IV ANTIBIOTICS: A RANDOMIZED PILOT TRIAL

Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiotain the Absence of Antibiotic Treatment

Impact of Fiber-Based Enteral Nutrition on the Gut Microbiome of ICU Patients Receiving Broad-Spectrum Antibiotics: A Randomized Pilot Trial

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis: e0147651

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