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Diffusion-Limited Growth of Microbial Colonies

Scientific reports, 2018-04, Vol.8 (1), p.5992-11, Article 5992

2018

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TAMMiCol: Tool for analysis of the morphology of microbial colonies

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006629-e1006629

2018

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Steady Two-Dimensional Free-Surface Flow Past Disturbances in an Open Channel: Solutions of the Korteweg–De Vries Equation and Analysis of the Weakly Nonlinear Phase Space

Fluids (Basel), 2019-02, Vol.4 (1), p.24

Binder, Benjamin

2019

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Neural crest regionalisation for enteric nervous system formation: Implications for Hirschsprung's disease and stem cell therapy

Developmental biology, 2010-03, Vol.339 (2), p.280-294

2010

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Quantifying two-dimensional filamentous and invasive growth spatial patterns in yeast colonies

PLoS computational biology, 2015-02, Vol.11 (2), p.e1004070-e1004070

2015

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Interpreting scratch assays using pair density dynamics and approximate Bayesian computation

Open biology, 2014-09, Vol.4 (9), p.140097-140097

2014

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Characterizing the shape patterns of dimorphic yeast pseudohyphae

Royal Society open science, 2018-10, Vol.5 (10), p.180820-180820

2018

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Spectral analysis of pair-correlation bandwidth: application to cell biology images

Royal Society open science, 2015-02, Vol.2 (2), p.140494-140494

2015

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Spatial Analysis of Multi-species Exclusion Processes: Application to Neural Crest Cell Migration in the Embryonic Gut

Bulletin of mathematical biology, 2012-02, Vol.74 (2), p.474-490

2012

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Modelling uniaxial non-uniform yeast colony growth: Comparing an agent-based model and continuum approximations

Journal of theoretical biology, 2021-08, Vol.523, p.110715-110715, Article 110715

2021

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Quantifying the effect of experimental design choices for in vitro scratch assays

Journal of theoretical biology, 2016-07, Vol.400, p.19-31

2016

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Modeling Uniaxial Nonuniform Cell Proliferation

Bulletin of mathematical biology, 2019-07, Vol.81 (7), p.2220-2238

2019

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A thin-film extensional flow model for biofilm expansion by sliding motility

Proceedings of the Royal Society. A, Mathematical, physical, and engineering sciences, 2019-09, Vol.475 (2229), p.20190175

2019

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Nutrient-limited growth with non-linear cell diffusion as a mechanism for floral pattern formation in yeast biofilms

Journal of theoretical biology, 2018-07, Vol.448, p.122-141

2018

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Discrete Manhattan and Chebyshev pair correlation functions in k dimensions

Physical review. E, 2020-07, Vol.102 (1), p.012130-012130, Article 012130

2020

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Quantifying the roles of cell motility and cell proliferation in a circular barrier assay

Journal of the Royal Society interface, 2013-05, Vol.10 (82), p.20130007

2013

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Non-uniqueness of steady free-surface flow at critical Froude number

Europhysics letters, 2014-02, Vol.105 (4), p.44003-p1-44003-p6

2014

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Steep waves in free-surface flow past narrow topography

Physics of fluids (1994), 2017-06, Vol.29 (6)

2017

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Predicting channel bed topography in hydraulic falls

Physics of fluids (1994), 2015-11, Vol.27 (11)

2015

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Cell density and cell size dynamics during in vitro tissue growth experiments: Implications for mathematical models of collective cell behaviour

Applied mathematical modelling, 2016-02, Vol.40 (4), p.3438-3446

2016

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Cell lineage tracing in the developing enteric nervous system: superstars revealed by experiment and simulation

Journal of the Royal Society interface, 2014-04, Vol.11 (93), p.20130815

2014

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Ghost rods adopting the role of withdrawn baffles in batch mixer designs

Physics letters. A, 2010-07, Vol.374 (34), p.3483-3486

Binder, Benjamin J.

2010

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Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model

Journal of the Royal Society interface, 2017-09, Vol.14 (134), p.20170314

2017

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A rigid body framework for multicellular modeling

Nature Computational Science, 2021-11, Vol.1 (11), p.754-766

2021

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Exclusion processes on a growing domain

Journal of theoretical biology, 2009-08, Vol.259 (3), p.541-551

2009

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Diffusion-Limited Growth of Microbial Colonies

TAMMiCol: Tool for analysis of the morphology of microbial colonies

Steady Two-Dimensional Free-Surface Flow Past Disturbances in an Open Channel: Solutions of the Korteweg–De Vries Equation and Analysis of the Weakly Nonlinear Phase Space

Neural crest regionalisation for enteric nervous system formation: Implications for Hirschsprung's disease and stem cell therapy

Quantifying two-dimensional filamentous and invasive growth spatial patterns in yeast colonies

Interpreting scratch assays using pair density dynamics and approximate Bayesian computation

Characterizing the shape patterns of dimorphic yeast pseudohyphae

Spectral analysis of pair-correlation bandwidth: application to cell biology images

Spatial Analysis of Multi-species Exclusion Processes: Application to Neural Crest Cell Migration in the Embryonic Gut

Modelling uniaxial non-uniform yeast colony growth: Comparing an agent-based model and continuum approximations

Quantifying the effect of experimental design choices for in vitro scratch assays

Modeling Uniaxial Nonuniform Cell Proliferation

A thin-film extensional flow model for biofilm expansion by sliding motility

Nutrient-limited growth with non-linear cell diffusion as a mechanism for floral pattern formation in yeast biofilms

Discrete Manhattan and Chebyshev pair correlation functions in k dimensions

Quantifying the roles of cell motility and cell proliferation in a circular barrier assay

Non-uniqueness of steady free-surface flow at critical Froude number

Steep waves in free-surface flow past narrow topography

Predicting channel bed topography in hydraulic falls

Cell density and cell size dynamics during in vitro tissue growth experiments: Implications for mathematical models of collective cell behaviour

Cell lineage tracing in the developing enteric nervous system: superstars revealed by experiment and simulation

Ghost rods adopting the role of withdrawn baffles in batch mixer designs

Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model

A rigid body framework for multicellular modeling

Exclusion processes on a growing domain

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