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PanTools v3: functional annotation, classification and phylogenomics

Bioinformatics, 2022-09, Vol.38 (18), p.4403-4405

2022

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Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Frontiers in artificial intelligence, 2022-06, Vol.5, p.959470-959470

2022

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Geometricus represents protein structures as shape-mers derived from moment invariants

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i718-i725

2020

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GeneNoteBook, a collaborative notebook for comparative genomics

Bioinformatics, 2019-11, Vol.35 (22), p.4779-4781

2019

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poreTally: run and publish de novo nanopore assembler benchmarks

Bioinformatics, 2019-08, Vol.35 (15), p.2663-2664

2019

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Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2036-2042

2019

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TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics, 2018-11, Vol.34 (22), p.3864-3872

2018

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Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.118-135

2018

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Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005734

2017

Volltextzugriff (PDF)

PanTools: representation, storage and exploration of pan-genomic data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i487-i493

2016

Volltextzugriff (PDF)

ACE: accurate correction of errors using K-mer tries

Bioinformatics, 2015-10, Vol.31 (19), p.3216-3218

2015

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Insight into neutral and disease-associated human genetic variants through interpretable predictors

PloS one, 2015-03, Vol.10 (3), p.e0120729-e0120729

2015

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Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

Bioinformatics, 2013-11, Vol.29 (22), p.2826-2834

2013

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De novo detection of copy number variation by co-assembly

Bioinformatics, 2012-12, Vol.28 (24), p.3195-3202

2012

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Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger

PloS one, 2012-10, Vol.7 (10), p.e45869-e45869

2012

Volltextzugriff (PDF)

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1429-1437

2012

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Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

IEEE/ACM transactions on computational biology and bioinformatics, 2011-01, Vol.8 (1), p.206-216

2011

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Integrating genome assemblies with MAIA

Bioinformatics, 2010-09, Vol.26 (18), p.i433-i439

2010

Volltextzugriff (PDF)

Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction

IEEE/ACM transactions on computational biology and bioinformatics, 2009-07, Vol.6 (3), p.427-437

2009

Volltextzugriff (PDF)

Integration of prior knowledge of measurement noise in kernel density classification

Pattern recognition, 2008, Vol.41 (1), p.320-330

2008

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Classification in the presence of class noise using a probabilistic Kernel Fisher method

Pattern recognition, 2007-12, Vol.40 (12), p.3349-3357

2007

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Maximum significance clustering of oligonucleotide microarrays

Bioinformatics, 2006-02, Vol.22 (3), p.326-331

2006

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Almost autonomous training of mixtures of principal component analyzers

Pattern recognition letters, 2004-07, Vol.25 (9), p.1085-1095

2004

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A note on core research issues for statistical pattern recognition

Pattern recognition letters, 2002-02, Vol.23 (4), p.493-499

2002

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Relational discriminant analysis

Pattern recognition letters, 1999-11, Vol.20 (11), p.1175-1181

1999

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PanTools v3: functional annotation, classification and phylogenomics

Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Geometricus represents protein structures as shape-mers derived from moment invariants

GeneNoteBook, a collaborative notebook for comparative genomics

poreTally: run and publish de novo nanopore assembler benchmarks

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Computational pan-genomics: status, promises and challenges

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PanTools: representation, storage and exploration of pan-genomic data

ACE: accurate correction of errors using K-mer tries

Insight into neutral and disease-associated human genetic variants through interpretable predictors

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

De novo detection of copy number variation by co-assembly

Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

Integrating genome assemblies with MAIA

Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction

Integration of prior knowledge of measurement noise in kernel density classification

Classification in the presence of class noise using a probabilistic Kernel Fisher method

Maximum significance clustering of oligonucleotide microarrays

Almost autonomous training of mixtures of principal component analyzers

A note on core research issues for statistical pattern recognition

Relational discriminant analysis

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