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Robust identification of perturbed cell types in single-cell RNA-seq data

Nature communications, 2024-09, Vol.15 (1), p.7610-14, Article 7610

2024

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Single-cell transcriptome analysis reveals distinct cell populations in dorsal root ganglia and their potential roles in diabetic peripheral neuropathy

PloS one, 2024-07, Vol.19 (7), p.e0306424

2024

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Canine mesenteric lymph nodes (MLNs) characterization by sc-RNAseq: insights compared to human and mouse MLNs

Scientific reports, 2024-08, Vol.14 (1), p.20290-6, Article 20290

2024

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Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone

Nature communications, 2024-08, Vol.15 (1), p.6684-16, Article 6684

2024

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RNA-Seq analysis of the fruiting bodies and mycelia of angel-wing mushroom Pleurocybella porrigens that cause acute encephalopathy

BMC research notes, 2024-07, Vol.17 (1), p.204-7, Article 204

2024

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starTracer is an accelerated approach for precise marker gene identification in single-cell RNA-Seq analysis

Communications biology, 2024-09, Vol.7 (1), p.1128-16, Article 1128

2024

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Integrating large-scale single-cell RNA sequencing in central nervous system disease using self-supervised contrastive learning

Communications biology, 2024-09, Vol.7 (1), p.1107-12, Article 1107

2024

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Integrated single-cell RNA-seq analysis reveals mitochondrial calcium signaling as a modulator of endothelial-to-mesenchymal transition

Science advances, 2024-08, Vol.10 (32), p.eadp6182

2024

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Single-cell RNA-seq reveals distinct metabolic "microniches" and close host-symbiont interactions in deep-sea chemosynthetic tubeworm

Science advances, 2024-07, Vol.10 (30), p.eadn3053

2024

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Global transcriptome analysis identifies critical functional modules associated with multiple abiotic stress responses in microalgae Chromochloris zofingiensis

PloS one, 2024-08, Vol.19 (8), p.e0307248

Panahi, Bahman

2024

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In-silico analysis of cattle blood transcriptome to identify lncRNAs and their role during bovine tuberculosis

Scientific reports, 2024-07, Vol.14 (1), p.16537-13, Article 16537

2024

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Comprehensive integrated single-cell RNA sequencing analysis of brain metastasis and glioma microenvironment: Contrasting heterogeneity landscapes

PloS one, 2024-07, Vol.19 (7), p.e0306220

2024

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Molecular characterization analysis of PANoptosis-related genes in colorectal cancer based on bioinformatic analysis

PloS one, 2024-08, Vol.19 (8), p.e0307651

2024

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Genome-wide identification and characterization of FORMIN gene family in potato (Solanum tuberosum L.) and their expression profiles in response to drought stress condition

PloS one, 2024-08, Vol.19 (8), p.e0309353

2024

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Identifying prognostic biomarkers in oral squamous cell carcinoma: an integrated single-cell and bulk RNA sequencing study on mitophagy-related genes

Scientific reports, 2024-08, Vol.14 (1), p.19992-14, Article 19992

2024

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Identifying crucial lncRNAs and mRNAs in hypoxia-induced A549 lung cancer cells and investigating their underlying mechanisms via high-throughput sequencing

PloS one, 2024-09, Vol.19 (9), p.e0307954

2024

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Differentially expressed heterogeneous overdispersion genes testing for count data

PloS one, 2024-07, Vol.19 (7), p.e0300565

2024

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Diurnal gene expression patterns in retina and choroid distinguish myopia progression from myopia onset

PloS one, 2024-07, Vol.19 (7), p.e0307091

2024

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Single-cell total-RNA profiling unveils regulatory hubs of transcription factors

Nature communications, 2024-07, Vol.15 (1), p.5941-18, Article 5941

2024

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TabDEG: Classifying differentially expressed genes from RNA-seq data based on feature extraction and deep learning framework

PloS one, 2024-07, Vol.19 (7), p.e0305857

2024

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A unified model for interpretable latent embedding of multi-sample, multi-condition single-cell data

Nature communications, 2024-08, Vol.15 (1), p.6573-15, Article 6573

2024

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Metaheuristic integrated machine learning classification of colon cancer using STFT LASSO and EHO feature extraction from microarray gene expressions

Scientific reports, 2024-07, Vol.14 (1), p.16485-19, Article 16485

2024

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A comprehensive study of CYP2E1 and its role in carcass characteristics and chemical lamb meat quality in different Indonesian sheep breeds

PloS one, 2024-09, Vol.19 (9), p.e0310336

2024

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Identification of key genes associated with acute myocardial infarction using WGCNA and two-sample mendelian randomization study

PloS one, 2024-07, Vol.19 (7), p.e0305532

2024

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An integrated bioinformatic investigation of kallikrein gene family members in kidney renel cell carcinoma

PloS one, 2024-08, Vol.19 (8), p.e0305070

2024

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Robust identification of perturbed cell types in single-cell RNA-seq data

Single-cell transcriptome analysis reveals distinct cell populations in dorsal root ganglia and their potential roles in diabetic peripheral neuropathy

Canine mesenteric lymph nodes (MLNs) characterization by sc-RNAseq: insights compared to human and mouse MLNs

Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone

RNA-Seq analysis of the fruiting bodies and mycelia of angel-wing mushroom Pleurocybella porrigens that cause acute encephalopathy

starTracer is an accelerated approach for precise marker gene identification in single-cell RNA-Seq analysis

Integrating large-scale single-cell RNA sequencing in central nervous system disease using self-supervised contrastive learning

Integrated single-cell RNA-seq analysis reveals mitochondrial calcium signaling as a modulator of endothelial-to-mesenchymal transition

Single-cell RNA-seq reveals distinct metabolic "microniches" and close host-symbiont interactions in deep-sea chemosynthetic tubeworm

Global transcriptome analysis identifies critical functional modules associated with multiple abiotic stress responses in microalgae Chromochloris zofingiensis

In-silico analysis of cattle blood transcriptome to identify lncRNAs and their role during bovine tuberculosis

Comprehensive integrated single-cell RNA sequencing analysis of brain metastasis and glioma microenvironment: Contrasting heterogeneity landscapes

Molecular characterization analysis of PANoptosis-related genes in colorectal cancer based on bioinformatic analysis

Genome-wide identification and characterization of FORMIN gene family in potato (Solanum tuberosum L.) and their expression profiles in response to drought stress condition

Identifying prognostic biomarkers in oral squamous cell carcinoma: an integrated single-cell and bulk RNA sequencing study on mitophagy-related genes

Identifying crucial lncRNAs and mRNAs in hypoxia-induced A549 lung cancer cells and investigating their underlying mechanisms via high-throughput sequencing

Differentially expressed heterogeneous overdispersion genes testing for count data

Diurnal gene expression patterns in retina and choroid distinguish myopia progression from myopia onset

Single-cell total-RNA profiling unveils regulatory hubs of transcription factors

TabDEG: Classifying differentially expressed genes from RNA-seq data based on feature extraction and deep learning framework

A unified model for interpretable latent embedding of multi-sample, multi-condition single-cell data

Metaheuristic integrated machine learning classification of colon cancer using STFT LASSO and EHO feature extraction from microarray gene expressions

A comprehensive study of CYP2E1 and its role in carcass characteristics and chemical lamb meat quality in different Indonesian sheep breeds

Identification of key genes associated with acute myocardial infarction using WGCNA and two-sample mendelian randomization study

An integrated bioinformatic investigation of kallikrein gene family members in kidney renel cell carcinoma

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