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Drug repositioning by integrating target information through a heterogeneous network model

Bioinformatics (Oxford, England), 2014-10, Vol.30 (20), p.2923-2930

2014

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phylostratr: a framework for phylostratigraphy

Bioinformatics, 2019-10, Vol.35 (19), p.3617-3627

2019

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Detecting genome-wide epistases based on the clustering of relatively frequent items

Bioinformatics, 2012-01, Vol.28 (1), p.5-12

2012

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ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution

Bioinformatics, 2013-03, Vol.29 (5), p.649-651

2013

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Identifying complex motifs in massive omics data with a variable-convolutional layer in deep neural network

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

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Quantitative model suggests both intrinsic and contextual features contribute to the transcript coding ability determination in cells

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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SEQanswers: an open access community for collaboratively decoding genomes

Bioinformatics (Oxford, England), 2012-05, Vol.28 (9), p.1272-1273

2012

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Haplotype-based linkage disequilibrium mapping via direct data mining

Bioinformatics, 2005-12, Vol.21 (24), p.4384-4393

2005

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MAVEN: a tool for visualization and functional analysis of genome-wide association results

Bioinformatics, 2010-01, Vol.26 (2), p.270-272

2010

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Network-based prediction of drug–target interactions using an arbitrary-order proximity embedded deep forest

Bioinformatics, 2020-05, Vol.36 (9), p.2805-2812

2020

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EP3: an ensemble predictor that accurately identifies type III secreted effectors

Briefings in bioinformatics, 2021-03, Vol.22 (2), p.1918-1928

2021

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SubLocEP: a novel ensemble predictor of subcellular localization of eukaryotic mRNA based on machine learning

Briefings in bioinformatics, 2021-09, Vol.22 (5)

2021

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CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system

Briefings in bioinformatics, 2024-01, Vol.25 (2)

2024

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Delta: a new web-based 3D genome visualization and analysis platform

Bioinformatics, 2018-04, Vol.34 (8), p.1409-1410

2018

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PTMint database of experimentally verified PTM regulation on protein-protein interaction

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

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A community-supported metaproteomic pipeline for improving peptide identifications in hydrothermal vent microbiota

Briefings in bioinformatics, 2021-09, Vol.22 (5)

2021

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Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite

Bioinformatics, 2020-04, Vol.36 (7), p.2033-2039

2020

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Deep learning radiomics under multimodality explore association between muscle/fat and metastasis and survival in breast cancer patients

Briefings in bioinformatics, 2022-11, Vol.23 (6)

2022

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Detecting epistatic effects in association studies at a genomic level based on an ensemble approach

Bioinformatics, 2011-07, Vol.27 (13), p.i222-i229

2011

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Network module-based model in the differential expression analysis for RNA-seq

Bioinformatics (Oxford, England), 2017-09, Vol.33 (17), p.2699-2705

2017

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Deep learning based on biologically interpretable genome representation predicts two types of human adaptation of SARS-CoV-2 variants

Briefings in bioinformatics, 2022-05, Vol.23 (3)

2022

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Identify gestational diabetes mellitus by deep learning model from cell-free DNA at the early gestation stage

Briefings in bioinformatics, 2023-11, Vol.25 (1)

2023

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A simple way to detect disease-associated cellular molecular alterations from mixed-cell blood samples

Briefings in bioinformatics, 2018-07, Vol.19 (4), p.613-621

2018

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Efficient identification of identical-by-descent status in pedigrees with many untyped individuals

Bioinformatics, 2010-06, Vol.26 (12), p.i191-i198

2010

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Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.52-64

2018

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Drug repositioning by integrating target information through a heterogeneous network model

phylostratr: a framework for phylostratigraphy

Detecting genome-wide epistases based on the clustering of relatively frequent items

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution

Identifying complex motifs in massive omics data with a variable-convolutional layer in deep neural network

Quantitative model suggests both intrinsic and contextual features contribute to the transcript coding ability determination in cells

SEQanswers: an open access community for collaboratively decoding genomes

Haplotype-based linkage disequilibrium mapping via direct data mining

MAVEN: a tool for visualization and functional analysis of genome-wide association results

Network-based prediction of drug–target interactions using an arbitrary-order proximity embedded deep forest

EP3: an ensemble predictor that accurately identifies type III secreted effectors

SubLocEP: a novel ensemble predictor of subcellular localization of eukaryotic mRNA based on machine learning

CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system

Delta: a new web-based 3D genome visualization and analysis platform

PTMint database of experimentally verified PTM regulation on protein-protein interaction

A community-supported metaproteomic pipeline for improving peptide identifications in hydrothermal vent microbiota

Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite

Deep learning radiomics under multimodality explore association between muscle/fat and metastasis and survival in breast cancer patients

Detecting epistatic effects in association studies at a genomic level based on an ensemble approach

Network module-based model in the differential expression analysis for RNA-seq

Deep learning based on biologically interpretable genome representation predicts two types of human adaptation of SARS-CoV-2 variants

Identify gestational diabetes mellitus by deep learning model from cell-free DNA at the early gestation stage

A simple way to detect disease-associated cellular molecular alterations from mixed-cell blood samples

Efficient identification of identical-by-descent status in pedigrees with many untyped individuals

Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes

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