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JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit

BMC bioinformatics, 2021-05, Vol.22 (1), p.226-226, Article 226

2021

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Analysis of SARS-CoV-2 Genomes from West Java, Indonesia

Viruses, 2021-10, Vol.13 (10), p.2097

2021

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MyDas, an extensible Java DAS server

PloS one, 2012-09, Vol.7 (9), p.e44180-e44180

2012

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Urban-rural difference in the determinants of dietary and energy intake patterns: A case study in West Java, Indonesia

PloS one, 2018-05, Vol.13 (5), p.e0197626-e0197626

2018

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BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

PloS one, 2018-10, Vol.13 (10), p.e0205286-e0205286

2018

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Major Bioactive Compounds from Java Plum Seeds: An Investigation of Its Extraction Procedures and Clinical Effects

Plants (Basel), 2023-03, Vol.12 (6), p.1214

2023

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Green Tea and Java Pepper Mixture Prevents Obesity by Increasing Energy Expenditure and Modulating Hepatic AMPK/MicroRNA-34a/370 Pathway in High-Fat Diet-Fed Rats

Antioxidants, 2023-05, Vol.12 (5), p.1053

2023

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Daily iron intake and BMI for age but not for daily tannin intake increase hemoglobin levels in young females at Karanganyar Regency, Central Java, Indonesia

Folia medica (Plovdiv), 2022-06, Vol.64 (3), p.437-442

2022

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The influence of different drying methods on cowhide crackers at PT Java Mandiri's Partner on protein content, expandability, and organoleptic quality

BIO Web of Conferences, 2023, Vol.81, p.13

2023

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VTBuilder: a tool for the assembly of multi isoform transcriptomes

BMC bioinformatics, 2014-12, Vol.15 (1), p.389-389, Article 389

2014

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FlexFlux: combining metabolic flux and regulatory network analyses

BMC systems biology, 2015-12, Vol.9 (1), p.93-93, Article 93

2015

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BioJava 5: A community driven open-source bioinformatics library

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006791-e1006791

2019

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Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes

Viruses, 2018-11, Vol.10 (11), p.637

2018

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Characterization of Bacteriophage Specific to Bacillus pumilus from Ciapus River in Bogor, West Java, Indonesia

Hayati : journal of biosciences, 2015-01, Vol.22 (1), p.27-33

2015

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CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution

BMC genomics, 2020-11, Vol.21 (1), p.832-832, Article 832

2020

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TreeVector: scalable, interactive, phylogenetic trees for the web

PloS one, 2010-01, Vol.5 (1), p.e8934-e8934

2010

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AN ANALYSIS OF PROTEIN AND CALORIE CONSUMPTION IN CENTRAL JAVA

Economic journal of emerging markets, 2012-10, Vol.4 (2), p.115

Widarjono, Agus

2012

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Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era

BMC genomics, 2012, Vol.13 Suppl 7 (Suppl 7), p.S24-S24

2012

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Semen quality and frozen semen production in Pasundan bulls: A molecular weight perspective on seminal plasma and spermatozoa protein

Journal of advanced veterinary and animal research, 2023-12, Vol.10 (4), p.730-737

2023

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Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

PloS one, 2020-05, Vol.15 (5), p.e0233438-e0233438

2020

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Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

PloS one, 2020-09, Vol.15 (9), p.e0239694-e0239694

2020

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TAGOPSIN: collating taxa-specific gene and protein functional and structural information

BMC bioinformatics, 2021-10, Vol.22 (1), p.1-517, Article 517

2021

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HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

BMC bioinformatics, 2022-01, Vol.23 (1), p.23-23, Article 23

2022

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Construction, visualisation, and clustering of transcription networks from microarray expression data

PLoS computational biology, 2007-10, Vol.3 (10), p.2032-2042

2007

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Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

BMC bioinformatics, 2017-03, Vol.18 (1), p.149-149, Article 149

2017

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JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit

Analysis of SARS-CoV-2 Genomes from West Java, Indonesia

MyDas, an extensible Java DAS server

Urban-rural difference in the determinants of dietary and energy intake patterns: A case study in West Java, Indonesia

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

Major Bioactive Compounds from Java Plum Seeds: An Investigation of Its Extraction Procedures and Clinical Effects

Green Tea and Java Pepper Mixture Prevents Obesity by Increasing Energy Expenditure and Modulating Hepatic AMPK/MicroRNA-34a/370 Pathway in High-Fat Diet-Fed Rats

Daily iron intake and BMI for age but not for daily tannin intake increase hemoglobin levels in young females at Karanganyar Regency, Central Java, Indonesia

The influence of different drying methods on cowhide crackers at PT Java Mandiri's Partner on protein content, expandability, and organoleptic quality

VTBuilder: a tool for the assembly of multi isoform transcriptomes

FlexFlux: combining metabolic flux and regulatory network analyses

BioJava 5: A community driven open-source bioinformatics library

Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes

Characterization of Bacteriophage Specific to Bacillus pumilus from Ciapus River in Bogor, West Java, Indonesia

CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution

TreeVector: scalable, interactive, phylogenetic trees for the web

AN ANALYSIS OF PROTEIN AND CALORIE CONSUMPTION IN CENTRAL JAVA

Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era

Semen quality and frozen semen production in Pasundan bulls: A molecular weight perspective on seminal plasma and spermatozoa protein

Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

TAGOPSIN: collating taxa-specific gene and protein functional and structural information

HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

Construction, visualisation, and clustering of transcription networks from microarray expression data

Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

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