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Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

Journal of imaging, 2023-01, Vol.9 (2), p.25

2023

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Identification of an mRNA isoform switch for HNRNPA1 in breast cancers

Scientific reports, 2021-12, Vol.11 (1), p.24444-24444, Article 24444

2021

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Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009171

2021

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Object‐Oriented Segmentation of Cell Nuclei in Fluorescence Microscopy Images

Cytometry. Part A, 2018-10, Vol.93 (10), p.1019-1028

2018

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The PI3K/AKT/mTOR interactive pathway

Molecular bioSystems, 2015-07, Vol.11 (7), p.1946-1954

2015

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Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

Molecular cancer therapeutics, 2019-11, Vol.18 (11), p.2146-2157

2019

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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1878-1912

2019

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DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Scientific reports, 2019-05, Vol.9 (1), p.7344, Article 7344

2019

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ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

BMC bioinformatics, 2018-09, Vol.19 (1), p.334-334, Article 334

2018

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Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response

eLife, 2020-04, Vol.9

2020

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EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers

Oncogene, 2022-01, Vol.41 (2), p.220-232

2022

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Iterative h‐minima‐based marker‐controlled watershed for cell nucleus segmentation

Cytometry. Part A, 2016-04, Vol.89 (4), p.338-349

2016

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Loss of heme oxygenase 2 causes reduced expression of genes in cardiac muscle development and contractility and leads to cardiomyopathy in mice

PloS one, 2023-10, Vol.18 (10), p.e0292990-e0292990

2023

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PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Molecular and cellular biology, 2015-05, Vol.35 (10), p.1741-1753

2015

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Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines

Scientific reports, 2018-01, Vol.8 (1), p.1570-14, Article 1570

2018

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Intermittent hypoxia inhibits epinephrine-induced transcriptional changes in human aortic endothelial cells

Scientific reports, 2022-10, Vol.12 (1), p.17167-17167, Article 17167

2022

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Smart markers for watershed-based cell segmentation

PloS one, 2012-11, Vol.7 (11), p.e48664-e48664

2012

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Contrast Enhancement of Microscopy Images Using Image Phase Information

IEEE access, 2018-01, Vol.6, p.3839-3850

2018

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HIF-1α induces glycolytic reprograming in tissue-resident alveolar macrophages to promote cell survival during acute lung injury

eLife, 2022-07, Vol.11

2022

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Intermittent Hypoxia-Induced Activation of Endothelial Cells Is Mediated via Sympathetic Activation-Dependent Catecholamine Release

Frontiers in physiology, 2021-07, Vol.12, p.701995-701995

2021

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Identification of novel reference genes based on MeSH categories

PloS one, 2014-03, Vol.9 (3), p.e93341-e93341

2014

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Image classification of human carcinoma cells using complex wavelet-based covariance descriptors

PloS one, 2013, Vol.8 (1), p.e52807-e52807

2013

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GOPred: GO molecular function prediction by combined classifiers

PloS one, 2010-08, Vol.5 (8), p.e12382-e12382

2010

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Design, synthesis, and biological evaluation of indole-based 1,4-disubstituted piperazines as cytotoxic agents

Turkish journal of chemistry, 2012-01

2012

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DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

Chemical science (Cambridge), 2020-03, Vol.11 (9), p.2531-2557

2020

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Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

Identification of an mRNA isoform switch for HNRNPA1 in breast cancers

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

Object‐Oriented Segmentation of Cell Nuclei in Fluorescence Microscopy Images

The PI3K/AKT/mTOR interactive pathway

Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response

EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers

Iterative h‐minima‐based marker‐controlled watershed for cell nucleus segmentation

Loss of heme oxygenase 2 causes reduced expression of genes in cardiac muscle development and contractility and leads to cardiomyopathy in mice

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines

Intermittent hypoxia inhibits epinephrine-induced transcriptional changes in human aortic endothelial cells

Smart markers for watershed-based cell segmentation

Contrast Enhancement of Microscopy Images Using Image Phase Information

HIF-1α induces glycolytic reprograming in tissue-resident alveolar macrophages to promote cell survival during acute lung injury

Intermittent Hypoxia-Induced Activation of Endothelial Cells Is Mediated via Sympathetic Activation-Dependent Catecholamine Release

Identification of novel reference genes based on MeSH categories

Image classification of human carcinoma cells using complex wavelet-based covariance descriptors

GOPred: GO molecular function prediction by combined classifiers

Design, synthesis, and biological evaluation of indole-based 1,4-disubstituted piperazines as cytotoxic agents

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

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