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Protein homology detection by HMM–HMM comparison

Bioinformatics, 2005-04, Vol.21 (7), p.951-960

Sfding, Johannes

2005

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Accelerated Profile HMM Searches

PLoS computational biology, 2011-10, Vol.7 (10), p.e1002195-e1002195

2011

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HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Nature methods, 2012-02, Vol.9 (2), p.173

2012

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Protein fold recognition using HMM–HMM alignment and dynamic programming

Journal of theoretical biology, 2016-03, Vol.393, p.67-74

2016

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Hidden Markov model speed heuristic and iterative HMM search procedure

BMC bioinformatics, 2010-08, Vol.11 (1), p.431-431, Article 431

2010

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nhmmer: DNA homology search with profile HMMs

Bioinformatics, 2013-10, Vol.29 (19), p.2487-2489

2013

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Improving Offline Handwritten Text Recognition with Hybrid HMM/ANN Models

IEEE transactions on pattern analysis and machine intelligence, 2011-04, Vol.33 (4), p.767-779

2011

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IEEE_Xplore

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

Gene, 2009-02, Vol.430 (1), p.50-57

2009

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Regularized Speaker Adaptation of KL-HMM for Dysarthric Speech Recognition

IEEE transactions on neural systems and rehabilitation engineering, 2017-09, Vol.25 (9), p.1581

2017

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HHsenser: exhaustive transitive profile search using HMM-HMM comparison

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W374

2006

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Human Activity Recognition with an HMM-Based Generative Model

Sensors (Basel, Switzerland), 2023, Vol.23 (3), p.1390

2023

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SAM-T08, HMM-based protein structure prediction

Nucleic acids research, 2009-07, Vol.37 (Web Server issue), p.W492

Karplus, Kevin

2009

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MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life

Bioinformatics (Oxford, England), 2024-03, Vol.40 (3)

2024

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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

Nucleic acids research, 2014-10, Vol.42 (19), p.e145

2014

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HIV-1 tropism prediction by the XGboost and HMM methods

Scientific reports, 2019-07, Vol.9 (1), p.9997-8, Article 9997

2019

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Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns

Journal of biomedical informatics, 2017-02, Vol.66, p.19-31

2017

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Traffic trajectory data analysis technology based on HMM model map matching algorithm

PloS one, 2024-05, Vol.19 (5), p.e0302656-e0302656

2024

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An Introduction to Infinite HMMs for Single-Molecule Data Analysis

Biophysical journal, 2017-05, Vol.112 (10), p.2021-2029

2017

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EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

Bioinformatics, 2015-08, Vol.31 (16), p.2614-2622

2015

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efam: an expanded, metaproteome-supported HMM profile database of viral protein families

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4202-4208

2021

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HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features

BioMed research international, 2017-01, Vol.2017, p.4590609-10

2017

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Predicting MoRFs in protein sequences using HMM profiles

BMC bioinformatics, 2016-12, Vol.17 (Suppl 19), p.504-504, Article 504

2016

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MoRFPred-plus: Computational Identification of MoRFs in Protein Sequences using Physicochemical Properties and HMM profiles

Journal of theoretical biology, 2018-01, Vol.437, p.9-16

2018

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Hercules: a profile HMM-based hybrid error correction algorithm for long reads

Nucleic acids research, 2018-11, Vol.46 (21), p.e125

2018

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COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM

Bioinformatics, 2021-07, Vol.37 (12), p.1761-1762

2021

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Protein homology detection by HMM–HMM comparison

Accelerated Profile HMM Searches

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Protein fold recognition using HMM–HMM alignment and dynamic programming

Hidden Markov model speed heuristic and iterative HMM search procedure

nhmmer: DNA homology search with profile HMMs

Improving Offline Handwritten Text Recognition with Hybrid HMM/ANN Models

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

Regularized Speaker Adaptation of KL-HMM for Dysarthric Speech Recognition

HHsenser: exhaustive transitive profile search using HMM-HMM comparison

Human Activity Recognition with an HMM-Based Generative Model

SAM-T08, HMM-based protein structure prediction

MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

HIV-1 tropism prediction by the XGboost and HMM methods

Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns

Traffic trajectory data analysis technology based on HMM model map matching algorithm

An Introduction to Infinite HMMs for Single-Molecule Data Analysis

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

efam: an expanded, metaproteome-supported HMM profile database of viral protein families

HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features

Predicting MoRFs in protein sequences using HMM profiles

MoRFPred-plus: Computational Identification of MoRFs in Protein Sequences using Physicochemical Properties and HMM profiles

Hercules: a profile HMM-based hybrid error correction algorithm for long reads

COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM

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