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Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Biological and Pharmaceutical Bulletin, 2024/03/01, Vol.47(3), pp.580-590

2024

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Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Biophysics and Physicobiology, 2019, Vol.16, pp.391-406

Kawabata, Takeshi

2019

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Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Journal of bioscience and bioengineering, 2017-07, Vol.124 (1), p.28-35

2017

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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Scientific reports, 2021-03, Vol.11 (1), p.6178-6178, Article 6178

2021

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Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Journal of bioscience and bioengineering, 2015-11, Vol.120 (5), p.491-497

2015

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Biophysical journal, 2008-11, Vol.95 (10), p.4643-4658

Kawabata, Takeshi

2008

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Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Integrative Structural Biology with Hybrid Methods, p.219-235

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Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

International journal of molecular sciences, 2013-01, Vol.14 (1), p.1218-1231

2013

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Engineered polyethylene terephthalate hydrolases: perspectives and limits

Applied microbiology and biotechnology, 2024-12, Vol.108 (1), p.404, Article 404

2024

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HOMCOS: an updated server to search and model complex 3D structures

Journal of structural and functional genomics, 2016-12, Vol.17 (4), p.83-99

Kawabata, Takeshi

2016

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Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Biophysical journal, 2013-01, Vol.104 (2), p.352a-352a

Kawabata, Takeshi

2013

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Analysis of Amino Acid Residues Involved in Catalysis of Polyethylene Glycol Dehydrogenase from Sphingopyxis terrae, Using Three-Dimensional Molecular Modeling-Based Kinetic Characterization of Mutants

Applied and Environmental Microbiology, 2006-06, Vol.72 (6), p.4388-4396

2006

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Molecular Interaction Mechanism of a 14-3‑3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling

Journal of chemical information and modeling, 2020-10, Vol.60 (10), p.4867-4880

2020

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Omokage Search and Gmfit: Shape Similarity Search and Superposition among Models and Maps

Biophysical journal, 2016-02, Vol.110 (3), p.157a-157a

2016

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Homcos : A Server to Search and Model 3D Structures of Protein-Protein and Compound-Protein Complexes

Biophysical journal, 2014-01, Vol.106 (2), p.207a-207a

2014

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Application of human thermal load into unsteady condition for improvement of outdoor thermal comfort

Building and environment, 2011-08, Vol.46 (8), p.1716-1724

2011

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A Comparison of 3D Conformations of Endothelin-1 Analogs to Find the Pharmacophore Model Required for Endothelin Receptor Ligand Activity

Biophysical journal, 2014-01, Vol.106 (2), p.479a-479a

2014

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Toward the next step in G protein-coupled receptor research: a knowledge-driven analysis for the next potential targets in drug discovery

Journal of structural and functional genomics, 2016-12, Vol.17 (4), p.111-133

2016

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Searching and viewing hybrid structure data

Acta crystallographica. Section A, Foundations and advances, 2017-12, Vol.73 (a2), p.C974-C974

2017

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Efficient and Secure Firmware Update/Rollback Method for Vehicular Devices

Information Security Practice and Experience, p.455-467

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3P-228 KCOMBU:a program for matching of chemical structures(Bioinformatics:Structural genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2009/09/20, Vol.49(supplement), pp.S189

Kawabata, Takeshi

2009

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3P-228 化学構造比較プログラムKCOMBUの開発(生命情報科学-構造ゲノミクス,第47回日本生物物理学会年会)

生物物理, 2009/09/20, Vol.49(supplement), pp.S189

2009

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Homozygous inactivation of CHEK2 is linked to a familial case of multiple primary lung cancer with accompanying cancers in other organs

Cold Spring Harbor molecular case studies, 2016-11, Vol.2 (6), p.a001032-a001032

2016

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2P-069 モルフォロジーを利用した蛋白質表面の様々な深さのポケットを同時に計算するアルゴリズムの開発(蛋白質・構造機能相関(2),第46回日本生物物理学会年会)

生物物理, 2008/10/25, Vol.48(supplement), pp.S85

2008

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2P-069 A fast algorithm for detection of pockets with multi-scale depth on protein surface by mathematical morphology(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2008/10/25, Vol.48(supplement), pp.S85

Kawabata, Takeshi

2008

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Structural Perspective of NR4A Nuclear Receptor Family and Their Potential Endogenous Ligands

Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot

Mutational analysis of cutinase-like enzyme, Cut190, based on the 3D docking structure with model compounds of polyethylene terephthalate

Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities

Comparison of genetic structures and biochemical properties of tandem cutinase-type polyesterases from Thermobifida alba AHK119

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

Rigid-Body Fitting of Atomic Models on 3D Density Maps of Electron Microscopy

Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family

Engineered polyethylene terephthalate hydrolases: perspectives and limits

HOMCOS: an updated server to search and model complex 3D structures

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex using Gaussian Mixture Model

Analysis of Amino Acid Residues Involved in Catalysis of Polyethylene Glycol Dehydrogenase from Sphingopyxis terrae, Using Three-Dimensional Molecular Modeling-Based Kinetic Characterization of Mutants

Molecular Interaction Mechanism of a 14-3‑3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling

Omokage Search and Gmfit: Shape Similarity Search and Superposition among Models and Maps

Homcos : A Server to Search and Model 3D Structures of Protein-Protein and Compound-Protein Complexes

Application of human thermal load into unsteady condition for improvement of outdoor thermal comfort

A Comparison of 3D Conformations of Endothelin-1 Analogs to Find the Pharmacophore Model Required for Endothelin Receptor Ligand Activity

Toward the next step in G protein-coupled receptor research: a knowledge-driven analysis for the next potential targets in drug discovery

Searching and viewing hybrid structure data

Efficient and Secure Firmware Update/Rollback Method for Vehicular Devices

3P-228 KCOMBU:a program for matching of chemical structures(Bioinformatics:Structural genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

3P-228 化学構造比較プログラムKCOMBUの開発(生命情報科学-構造ゲノミクス,第47回日本生物物理学会年会)

Homozygous inactivation of CHEK2 is linked to a familial case of multiple primary lung cancer with accompanying cancers in other organs

2P-069 モルフォロジーを利用した蛋白質表面の様々な深さのポケットを同時に計算するアルゴリズムの開発(蛋白質・構造機能相関(2),第46回日本生物物理学会年会)

2P-069 A fast algorithm for detection of pockets with multi-scale depth on protein surface by mathematical morphology(The 46th Annual Meeting of the Biophysical Society of Japan)

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