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Enhancer loops appear stable during development and are associated with paused polymerase

Nature (London), 2014-08, Vol.512 (7512), p.96-100

2014

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The road ahead in genetics and genomics

Nature reviews. Genetics, 2020-10, Vol.21 (10), p.581

2020

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Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

BMC bioinformatics, 2016-10, Vol.17 (1), p.419-419, Article 419

2016

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Regulating specificity in enhancer–promoter communication

Current opinion in cell biology, 2022-04, Vol.75, p.102065-102065, Article 102065

2022

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The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila

Genetics (Austin), 2018-09, Vol.210 (1), p.129-136

2018

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Enhancers have more cofactor specificity than we think: A potential new way to classify enhancers based on their functional cofactor requirements

Molecular cell, 2022-08, Vol.82 (16), p.2922-2924

2022

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scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation

Genome Biology, 2022-01, Vol.23 (1), p.8-8, Article 8

2022

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Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo

Nature (London), 2024-02, Vol.626 (7997), p.207-211

2024

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The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

Genome research, 2021-09, Vol.31 (9), p.1573

2021

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Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

PLoS genetics, 2014-01, Vol.10 (1), p.e1004060-e1004060

2014

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Model-based method for transcription factor target identification with limited data

Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (17), p.7793-7798

2010

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To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?

Current opinion in genetics & development, 2021-04, Vol.67, p.119-129

2021

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Predictive features of gene expression variation reveal mechanistic link with differential expression

Molecular systems biology, 2020-08, Vol.16 (8), p.e9539-n/a

2020

Volltextzugriff (PDF)

Gene Expression during the Life Cycle of Drosophila melanogaster

Science (American Association for the Advancement of Science), 2002-09, Vol.297 (5590), p.2270-2275

2002

Volltextzugriff (PDF)

Genetic variants regulating expression levels and isoform diversity during embryogenesis

Nature (London), 2017-01, Vol.541 (7637), p.402-406

2017

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Chromatin gene-gene loops support the cross-regulation of genes with related function

Molecular cell, 2024-03, Vol.84 (5), p.822-838.e8

2024

Volltextzugriff (PDF)

The continuum of Drosophila embryonic development at single-cell resolution

Science (American Association for the Advancement of Science), 2022-08, Vol.377 (6606), p.eabn5800-eabn5800

2022

Volltextzugriff (PDF)

Enhancer-promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation

Nature genetics, 2024-04, Vol.56 (4), p.686-696

2024

Volltextzugriff (PDF)

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Current biology, 2018-11, Vol.28 (22), p.3547-3561.e9

2018

Volltextzugriff (PDF)

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

Developmental cell, 2021-08, Vol.56 (16), p.2348-2363.e8

2021

Volltextzugriff (PDF)

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories

Developmental cell, 2022-02, Vol.57 (4), p.496-511.e8

2022

Volltextzugriff (PDF)

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis

Developmental cell, 2020-12, Vol.55 (5), p.648-664.e9

2020

Volltextzugriff (PDF)

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

PLoS computational biology, 2016-09, Vol.12 (9), p.e1005073-e1005073

2016

Volltextzugriff (PDF)

Learning from data to predict future symptoms of oncology patients

PloS one, 2018-12, Vol.13 (12), p.e0208808-e0208808

2018

Volltextzugriff (PDF)

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development

PLoS genetics, 2019-09, Vol.15 (9), p.e1008382-e1008382

2019

Volltextzugriff (PDF)

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Enhancer loops appear stable during development and are associated with paused polymerase

The road ahead in genetics and genomics

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

Regulating specificity in enhancer–promoter communication

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila

Enhancers have more cofactor specificity than we think: A potential new way to classify enhancers based on their functional cofactor requirements

scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation

Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

Model-based method for transcription factor target identification with limited data

To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?

Predictive features of gene expression variation reveal mechanistic link with differential expression

Gene Expression during the Life Cycle of Drosophila melanogaster

Genetic variants regulating expression levels and isoform diversity during embryogenesis

Chromatin gene-gene loops support the cross-regulation of genes with related function

The continuum of Drosophila embryonic development at single-cell resolution

Enhancer-promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

Learning from data to predict future symptoms of oncology patients

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development

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