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MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory

Bioinformatics, 2015-04, Vol.31 (8), p.1328-1330

2015

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The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software

Neuroinformatics (Totowa, N.J.), 2010-03, Vol.8 (1), p.5-17

2010

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Test-retest analysis of multiple 31 P magnetization exchange pathways using asymmetric adiabatic inversion

Magnetic resonance in medicine, 2017-07, Vol.78 (1), p.33-39

2017

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CONRAD—A software framework for cone-beam imaging in radiology

Medical physics (Lancaster), 2013-11, Vol.40 (11), p.111914-n/a

2013

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Flow Plex—A tool for unbiased comprehensive flow cytometry data analysis

Immunity, Inflammation and Disease, 2019-09, Vol.7 (3), p.105-111

2019

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The GlycomeAtlas tool for visualizing and querying glycome data

Bioinformatics, 2012-11, Vol.28 (21), p.2849-2850

2012

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BrainImageJ: a Java-based framework for interoperability in neuroscience, with specific application to neuroimaging

Journal of the American Medical Informatics Association : JAMIA, 2001-09, Vol.8 (5), p.431-442

2001

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Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

Nucleic acids research, 2014-05, Vol.42 (9), p.e78-e78

2014

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BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method

Bioinformatics, 2015-07, Vol.31 (14), p.2412-2414

2015

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With a little help from a computer: discriminating between bacterial and viral meningitis based on dominance-based rough set approach analysis

Medicine (Baltimore), 2017-08, Vol.96 (32), p.e7635-e7635

2017

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KAnalyze: a fast versatile pipelined k-mer toolkit

Bioinformatics (Oxford, England), 2014-07, Vol.30 (14), p.2070-2072

2014

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MutationFinder: a high-performance system for extracting point mutation mentions from text

Bioinformatics, 2007-07, Vol.23 (14), p.1862-1865

2007

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CLICK and EXPANDER: a system for clustering and visualizing gene expression data

Bioinformatics, 2003-09, Vol.19 (14), p.1787-1799

2003

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Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes

Bioinformatics (Oxford, England), 2017-07, Vol.33 (14), p.i369-i378

2017

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A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human

Bioinformatics, 2015-07, Vol.31 (14), p.2348-2355

2015

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Computing chemical organizations in biological networks

Bioinformatics, 2008-07, Vol.24 (14), p.1611-1618

2008

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IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W503-W508

2008

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PRINCIPLE: a tool for associating genes with diseases via network propagation

Bioinformatics, 2011-12, Vol.27 (23), p.3325-3326

2011

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jModelTest: Phylogenetic Model Averaging

Molecular biology and evolution, 2008-07, Vol.25 (7), p.1253-1256

Posada, David

2008

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ABRA: improved coding indel detection via assembly-based realignment

Bioinformatics (Oxford, England), 2014-10, Vol.30 (19), p.2813-2815

2014

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Adherence with capecitabine: A population-based analysis based on prescription refill data

Journal of oncology pharmacy practice, 2017-06, Vol.23 (4), p.284-287

2017

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Inlet and outlet valve flow and regurgitant volume may be directly and reliably quantified with accelerated, volumetric phase-contrast MRI

Journal of magnetic resonance imaging, 2015-02, Vol.41 (2), p.376-385

2015

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Automated recognition of retroviral sequences in genomic data--RetroTector

Nucleic acids research, 2007-08, Vol.35 (15), p.4964-4976

2007

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An evaluation of new criteria for CpG islands in the human genome as gene markers

Bioinformatics, 2004-05, Vol.20 (7), p.1170-1177

2004

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Simple Derivation of the Initial Fluid Rate for the Resuscitation of Severely Burned Adult Combat Casualties: In Silico Validation of the Rule of 10

The journal of trauma, 2010-07, Vol.69 (1 Suppl), p.S49-S54

2010

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MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory

The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software

Test-retest analysis of multiple 31 P magnetization exchange pathways using asymmetric adiabatic inversion

CONRAD—A software framework for cone-beam imaging in radiology

Flow Plex—A tool for unbiased comprehensive flow cytometry data analysis

The GlycomeAtlas tool for visualizing and querying glycome data

BrainImageJ: a Java-based framework for interoperability in neuroscience, with specific application to neuroimaging

Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method

With a little help from a computer: discriminating between bacterial and viral meningitis based on dominance-based rough set approach analysis

KAnalyze: a fast versatile pipelined k-mer toolkit

MutationFinder: a high-performance system for extracting point mutation mentions from text

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes

A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human

Computing chemical organizations in biological networks

IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis

PRINCIPLE: a tool for associating genes with diseases via network propagation

jModelTest: Phylogenetic Model Averaging

ABRA: improved coding indel detection via assembly-based realignment

Adherence with capecitabine: A population-based analysis based on prescription refill data

Inlet and outlet valve flow and regurgitant volume may be directly and reliably quantified with accelerated, volumetric phase-contrast MRI

Automated recognition of retroviral sequences in genomic data--RetroTector

An evaluation of new criteria for CpG islands in the human genome as gene markers

Simple Derivation of the Initial Fluid Rate for the Resuscitation of Severely Burned Adult Combat Casualties: In Silico Validation of the Rule of 10

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