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Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

Biochemical journal, 2013-02, Vol.449 (3), p.581-594

2013

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CATH: expanding the horizons of structure-based functional annotations for genome sequences

Nucleic acids research, 2019-01, Vol.47 (D1), p.D280

2019

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Protein function annotation using protein domain family resources

Methods (San Diego, Calif.), 2016-01, Vol.93, p.24-34

2016

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An analysis of tissue-specific alternative splicing at the protein level

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008287-e1008287

2020

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Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005791-e1005791

2017

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Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

PLoS computational biology, 2013-05, Vol.9 (5), p.e1003063-e1003063

2013

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Functional innovation from changes in protein domains and their combinations

Current opinion in structural biology, 2016-06, Vol.38, p.44-52

2016

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Exploiting structural classifications for function prediction: towards a domain grammar for protein function

Current opinion in structural biology, 2009-06, Vol.19 (3), p.349-356

2009

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Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint

BMC bioinformatics, 2007-03, Vol.8 (1), p.86-86, Article 86

2007

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Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

PLoS computational biology, 2007-11, Vol.3 (11), p.e237-e237

2007

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Target selection for structural genomics: an overview

Methods in molecular biology (Clifton, N.J.), 2008, Vol.426, p.3

2008

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This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes

PLoS computational biology, 2012-11, Vol.8 (11), p.e1002701-e1002701

2012

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Protein families and their evolution-a structural perspective

Annual review of biochemistry, 2005-01, Vol.74 (1), p.867-900

2005

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Comparison of Drosophila melanogaster Embryo and Adult Proteome by SWATH-MS Reveals Differential Regulation of Protein Synthesis, Degradation Machinery, and Metabolism Modules

Journal of proteome research, 2019-06, Vol.18 (6), p.2525-2534

2019

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Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila

Scientific reports, 2020-10, Vol.10 (1), p.18517-18517, Article 18517

2020

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Positive selection during the evolution of the blood coagulation factors in the context of their disease-causing mutations

Molecular biology and evolution, 2014-11, Vol.31 (11), p.3040-3056

2014

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Evolution of protein function, from a structural perspective

Current Opinion in Chemical Biology, 1999-10, Vol.3 (5), p.548-556

1999

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Identifying and characterising key alternative splicing events in Drosophila development

BMC genomics, 2015-08, Vol.16 (1), p.608-608, Article 608

2015

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The evolution of protein functions and networks: a family-centric approach

Biochemical Society transactions, 2009-08, Vol.37 (Pt 4), p.745

2009

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Progress of Structural Genomics Initiatives: An Analysis of Solved Target Structures

Journal of molecular biology, 2005-05, Vol.348 (5), p.1235-1260

2005

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Rigid-body Ligand Recognition Drives Cytotoxic T-lymphocyte Antigen 4 (CTLA-4) Receptor Triggering

The Journal of biological chemistry, 2011-02, Vol.286 (8), p.6685-6696

2011

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Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space

Nucleic acids research, 2006-01, Vol.34 (3), p.1066

2006

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Protein folds, functions and evolution

Journal of molecular biology, 1999-10, Vol.293 (2), p.333-342

1999

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Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database

Genome research, 2002-03, Vol.12 (3), p.503

2002

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Alpha plus beta folds revisited: some favoured motifs

Structure (London), 1993-10, Vol.1 (2), p.105-120

1993

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Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

CATH: expanding the horizons of structure-based functional annotations for genome sequences

Protein function annotation using protein domain family resources

An analysis of tissue-specific alternative splicing at the protein level

Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster

Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

Functional innovation from changes in protein domains and their combinations

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint

Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

Target selection for structural genomics: an overview

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes

Protein families and their evolution-a structural perspective

Comparison of Drosophila melanogaster Embryo and Adult Proteome by SWATH-MS Reveals Differential Regulation of Protein Synthesis, Degradation Machinery, and Metabolism Modules

Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila

Positive selection during the evolution of the blood coagulation factors in the context of their disease-causing mutations

Evolution of protein function, from a structural perspective

Identifying and characterising key alternative splicing events in Drosophila development

The evolution of protein functions and networks: a family-centric approach

Progress of Structural Genomics Initiatives: An Analysis of Solved Target Structures

Rigid-body Ligand Recognition Drives Cytotoxic T-lymphocyte Antigen 4 (CTLA-4) Receptor Triggering

Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space

Protein folds, functions and evolution

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database

Alpha plus beta folds revisited: some favoured motifs

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