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Latent periodic process inference from single-cell RNA-seq data

Nature communications, 2020-03, Vol.11 (1), p.1441-8, Article 1441

2020

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Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling

Nature communications, 2019-12, Vol.10 (1), p.5743-12, Article 5743

2019

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SCMarker: Ab initio marker selection for single cell transcriptome profiling

PLoS computational biology, 2019-10, Vol.15 (10), p.e1007445

2019

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Extended live-cell barcoding approach for multiplexed mass cytometry

Scientific reports, 2021-06, Vol.11 (1), p.12388-12388, Article 12388

2021

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Bi-order multimodal integration of single-cell data

Genome Biology, 2022-05, Vol.23 (1), p.112-25, Article 112

2022

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Automatic Image Cropping: A Computational Complexity Study

2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016, p.507-515

2016

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Sensei: how many samples to tell a change in cell type abundance?

BMC bioinformatics, 2022-01, Vol.23 (1), p.2-2, Article 2

2022

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MEDALT: single-cell copy number lineage tracing enabling gene discovery

Genome Biology, 2021-02, Vol.22 (1), p.70-22, Article 70

2021

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Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data

Communications biology, 2024-03, Vol.7 (1), p.326-326, Article 326

2024

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Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution

Nature communications, 2022-06, Vol.13 (1), p.3652-3652, Article 3652

2022

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Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection

Nature communications, 2024-01, Vol.15 (1), p.109-14, Article 109

2024

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Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes

Frontiers in oncology, 2021-08, Vol.11, p.705627-705627

2021

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In-depth analysis of SARS-CoV-2-specific T cells reveals diverse differentiation hierarchies in vaccinated individuals

JCI insight, 2022-04, Vol.7 (7)

2022

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Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance

Communications biology, 2023-07, Vol.6 (1), p.765-765, Article 765

2023

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Linear time symmetric axis search based on palindrome detection

2016 IEEE International Conference on Image Processing (ICIP), 2016, p.1799-1803

2016

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Biomarker subpanel customization for different use cases in acute myeloid leukemia research

Journal of clinical oncology, 2023-06, Vol.41 (16_suppl), p.e19026-e19026

2023

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Massively multiplex blocker displacement amplification (BDA) for the detection of measurable residual disease in acute myeloid leukemia

Journal of clinical oncology, 2023-06, Vol.41 (16_suppl), p.e19045-e19045

2023

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Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data

IEEE/ACM transactions on computational biology and bioinformatics, 2021-11, Vol.18 (6), p.2072-2079

2021

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Interpretable and Efficient Machine Learning in Cancer Biology

Liang, Shaoheng

2022

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Stromal-derived NRG1 enables oncogenic KRAS bypass in pancreas cancer

Genes & development, 2023-09, Vol.37 (17-18), p.818-828

2023

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Single-cell RNA and T cell receptor (TCR) sequencing in patients with HPV-positive head and neck squamous cell carcinoma (HNSCC) after induction CTLA4 and PD-1 immune checkpoint blockade (ICB)

Journal of clinical oncology, 2023-06, Vol.41 (16_suppl), p.6056-6056

2023

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Single-Cell Proteomics Identifies Leukemia Landscape Associated with Clinical Outcomes in R/R AML Treated with MDM2i (Milademetan) and FLT3i (Quizartinib): Putative Role of CD68 and Diversity Index

Blood, 2021-11, Vol.138 (Supplement 1), p.3443-3443

2021

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Abstract PO-017: Single-cell copy number heterogeneity tracing enabling cancer gene discovery

Cancer research (Chicago, Ill.), 2020-11, Vol.80 (21_Supplement), p.PO-017-PO-017

2020

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Abstract 4424: Medatree enabling single cell copy number lineage tracing and functional discovery

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.4424-4424

2020

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Single-cell manifold-preserving feature selection for detecting rare cell populations

Nature Computational Science, 2021-05, Vol.1 (5), p.374-384

2021

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Latent periodic process inference from single-cell RNA-seq data

Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling

SCMarker: Ab initio marker selection for single cell transcriptome profiling

Extended live-cell barcoding approach for multiplexed mass cytometry

Bi-order multimodal integration of single-cell data

Automatic Image Cropping: A Computational Complexity Study

Sensei: how many samples to tell a change in cell type abundance?

MEDALT: single-cell copy number lineage tracing enabling gene discovery

Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data

Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution

Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection

Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes

In-depth analysis of SARS-CoV-2-specific T cells reveals diverse differentiation hierarchies in vaccinated individuals

Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance

Linear time symmetric axis search based on palindrome detection

Biomarker subpanel customization for different use cases in acute myeloid leukemia research

Massively multiplex blocker displacement amplification (BDA) for the detection of measurable residual disease in acute myeloid leukemia

Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data

Interpretable and Efficient Machine Learning in Cancer Biology

Stromal-derived NRG1 enables oncogenic KRAS bypass in pancreas cancer

Single-cell RNA and T cell receptor (TCR) sequencing in patients with HPV-positive head and neck squamous cell carcinoma (HNSCC) after induction CTLA4 and PD-1 immune checkpoint blockade (ICB)

Single-Cell Proteomics Identifies Leukemia Landscape Associated with Clinical Outcomes in R/R AML Treated with MDM2i (Milademetan) and FLT3i (Quizartinib): Putative Role of CD68 and Diversity Index

Abstract PO-017: Single-cell copy number heterogeneity tracing enabling cancer gene discovery

Abstract 4424: Medatree enabling single cell copy number lineage tracing and functional discovery

Single-cell manifold-preserving feature selection for detecting rare cell populations

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