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A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

Cell host & microbe, 2020-04, Vol.27 (4), p.671-680.e2

2020

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Peptide binding predictions for HLA DR, DP and DQ molecules

BMC bioinformatics, 2010-11, Vol.11 (1), p.568-568, Article 568

2010

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Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

BMC bioinformatics, 2007-09, Vol.8 (1), p.361-361, Article 361

2007

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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

Immunity (Cambridge, Mass.), 2017-02, Vol.46 (2), p.315-326

2017

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T cells in atherosclerosis

International immunology, 2013-11, Vol.25 (11), p.615-622

2013

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Are Ancient Durum Wheats Less Toxic to Celiac Patients? A Study of α-Gliadin from Graziella Ra and Kamut

TheScientificWorld, 2012-01, Vol.2012, p.837416-8

2012

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Dengue virus infection elicits highly polarized CX3CR1⁺ cytotoxic CD4⁺ T cells associated with protective immunity

Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (31), p.E4256-E4263

2015

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

PLoS computational biology, 2008-04, Vol.4 (4), p.e1000048-e1000048

2008

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A large fraction of HLA class I ligands are proteasome-generated spliced peptides

Science (American Association for the Advancement of Science), 2016-10, Vol.354 (6310), p.354-358

2016

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Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

BMC bioinformatics, 2009-11, Vol.10 (1), p.394-394, Article 394

2009

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HLA class I supertypes: a revised and updated classification

BMC immunology, 2008-01, Vol.9 (1), p.1-1, Article 1

2008

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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

The Journal of experimental medicine, 2014-10, Vol.211 (11), p.2231-2248

2014

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Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

Blood, 2014-07, Vol.124 (3), p.453-462

2014

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NetMHCpan, a method for MHC class I binding prediction beyond humans

Immunogenetics (New York), 2009-01, Vol.61 (1), p.1-13

2009

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Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells

Proceedings of the National Academy of Sciences - PNAS, 2013-05, Vol.110 (22), p.E2046-E2053

2013

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Human Ebola virus infection results in substantial immune activation

Proceedings of the National Academy of Sciences - PNAS, 2015-04, Vol.112 (15), p.4719-4724

2015

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Automated benchmarking of peptide-MHC class I binding predictions

Bioinformatics, 2015-07, Vol.31 (13), p.2174-2181

2015

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Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

Nature communications, 2019-06, Vol.10 (1), p.2846-14, Article 2846

2019

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High levels of dd‐cfDNA identify patients with TCMR 1A and borderline allograft rejection at elevated risk of graft injury

American journal of transplantation, 2020-09, Vol.20 (9), p.2491-2498

2020

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Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

Proceedings of the National Academy of Sciences - PNAS, 2012-06, Vol.109 (25), p.9959-9964

2012

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Predicting population coverage of T-cell epitope-based diagnostics and vaccines

BMC bioinformatics, 2006-03, Vol.7 (1), p.153-153, Article 153

2006

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Predicting HLA CD4 Immunogenicity in Human Populations

Frontiers in immunology, 2018-06, Vol.9, p.1369-1369

2018

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Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19

PLoS pathogens, 2021-09, Vol.17 (9), p.e1009842-e1009842

2021

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Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells

Cancer immunology research, 2019-01, Vol.7 (1), p.62-76

2019

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Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset

PLoS pathogens, 2013-01, Vol.9 (1), p.e1003130-e1003130

2013

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