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Mapping genomic and epigenomic evolution in cancer ecosystems

Science (American Association for the Advancement of Science), 2021-09, Vol.373 (6562), p.1474-1479

2021

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Methyl-CpG-binding domain proteins: readers of the epigenome

Epigenomics, 2015-09, Vol.7 (6), p.1051-1073

2015

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Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate

Nucleic acids research, 2021-11, Vol.49 (19), p.e109

2021

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Action at a distance: epigenetic silencing of large chromosomal regions in carcinogenesis

Human molecular genetics, 2007-04, Vol.16 (R1), p.R88-R95

Clark, Susan J

2007

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Coordinated epigenetic repression of the miR‐200 family and miR‐205 in invasive bladder cancer

International journal of cancer, 2011-03, Vol.128 (6), p.1327-1334

2011

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Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements

Nucleic acids research, 2007-09, Vol.35 (18), p.e119

2007

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Chromatin remodeler mutations in human cancers: epigenetic implications

Epigenomics, 2014-08, Vol.6 (4), p.397-414

2014

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Hormonal and Metabolic Responses to a Single Bout of Resistance Exercise in Prader-Willi Syndrome

Hormone research in paediatrics, 2017-01, Vol.87 (3), p.153-161

2017

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Disruption of the 3D cancer genome blueprint

Epigenomics, 2017-01, Vol.9 (1), p.47-55

2017

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MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

Bioinformatics (Oxford, England), 2021-08, Vol.37 (15), p.2198-2200

2021

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Long-range regulators of the lncRNA HOTAIR enhance its prognostic potential in breast cancer

Human molecular genetics, 2016-08, Vol.25 (15), p.3269-3283

2016

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Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

Bioinformatics, 2019-02, Vol.35 (4), p.560-570

2019

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Repitools: an R package for the analysis of enrichment-based epigenomic data

Bioinformatics, 2010-07, Vol.26 (13), p.1662-1663

2010

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NGSANE: a lightweight production informatics framework for high-throughput data analysis

Bioinformatics, 2014-05, Vol.30 (10), p.1471-1472

2014

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Low O6-methylguanine-DNA methyltransferase (MGMT) expression and response to temozolomide in aggressive pituitary tumours

Clinical endocrinology (Oxford), 2009-08, Vol.71 (2), p.226-233

2009

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H2A.Z acetylation and transcription: ready, steady, go

Epigenomics, 2016-05, Vol.8 (5), p.583-586

2016

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Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning

Human molecular genetics, 2009-08, Vol.18 (16), p.3098-3109

2009

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Lineage Specific Methylation of the Elf5 Promoter in Mammary Epithelial Cells

Stem cells (Dayton, Ohio), 2011-10, Vol.29 (10), p.1611-1619

2011

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Hypermethylation trigger of the glutathione-s-transferase gene (GSTP1) in prostate cancer cells

Oncogene, 2002-02, Vol.21 (7), p.1048-1061

2002

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Exploring and exploiting the aberrant DNA methylation profile of endocrine-resistant breast cancer

Epigenomics, 2013-12, Vol.5 (6), p.595-598

2013

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Epigenetic architecture and miRNA: reciprocal regulators

Epigenomics, 2010-12, Vol.2 (6), p.823-840

2010

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Protocol matters: which methylome are you actually studying?

Epigenomics, 2010-08, Vol.2 (4), p.587-598

2010

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Detailed methylation analysis of the glutathione S-transferase π (GSTP1) gene in prostate cancer

Oncogene, 1999-02, Vol.18 (6), p.1313-1324

1999

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Hypermethylation of the prostacyclin synthase (PTGIS) promoter is a frequent event in colorectal cancer and associated with aneuploidy

Oncogene, 2005-11, Vol.24 (49), p.7320-7326

2005

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Mapping genomic and epigenomic evolution in cancer ecosystems

Methyl-CpG-binding domain proteins: readers of the epigenome

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate

Action at a distance: epigenetic silencing of large chromosomal regions in carcinogenesis

Coordinated epigenetic repression of the miR‐200 family and miR‐205 in invasive bladder cancer

Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements

Chromatin remodeler mutations in human cancers: epigenetic implications

Hormonal and Metabolic Responses to a Single Bout of Resistance Exercise in Prader-Willi Syndrome

Disruption of the 3D cancer genome blueprint

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

Detailed DNA methylation characterisation of phyllodes tumours identifies a signature of malignancy and distinguishes phyllodes from metaplastic breast carcinoma

Long-range regulators of the lncRNA HOTAIR enhance its prognostic potential in breast cancer

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

Repitools: an R package for the analysis of enrichment-based epigenomic data

NGSANE: a lightweight production informatics framework for high-throughput data analysis

Low O6-methylguanine-DNA methyltransferase (MGMT) expression and response to temozolomide in aggressive pituitary tumours

H2A.Z acetylation and transcription: ready, steady, go

Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning

Lineage Specific Methylation of the Elf5 Promoter in Mammary Epithelial Cells

Hypermethylation trigger of the glutathione-s-transferase gene (GSTP1) in prostate cancer cells

Exploring and exploiting the aberrant DNA methylation profile of endocrine-resistant breast cancer

Epigenetic architecture and miRNA: reciprocal regulators

Protocol matters: which methylome are you actually studying?

Detailed methylation analysis of the glutathione S-transferase π (GSTP1) gene in prostate cancer

Hypermethylation of the prostacyclin synthase (PTGIS) promoter is a frequent event in colorectal cancer and associated with aneuploidy

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