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Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny

Nature communications, 2022-11, Vol.13 (1), p.6968-6968, Article 6968

Edgar, Robert C.

2022

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Updating the 97% identity threshold for 16S ribosomal RNA OTUs

Bioinformatics, 2018-07, Vol.34 (14), p.2371-2375

2018

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Search and clustering orders of magnitude faster than BLAST

Bioinformatics, 2010-10, Vol.26 (19), p.2460-2461

EDGAR, Robert C

2010

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Error filtering, pair assembly and error correction for next-generation sequencing reads

Bioinformatics, 2015-11, Vol.31 (21), p.3476-3482

2015

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Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences

PeerJ (San Francisco, CA), 2018-04, Vol.6, p.e4652-e4652, Article e4652

Edgar, Robert C

2018

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Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

PeerJ (San Francisco, CA), 2017-10, Vol.5, p.e3889-e3889, Article e3889

Edgar, Robert C

2017

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

BMC bioinformatics, 2004-08, Vol.5 (1), p.113-113, Article 113

Edgar, Robert C

2004

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UCHIME improves sensitivity and speed of chimera detection

Bioinformatics, 2011-08, Vol.27 (16), p.2194-2200

2011

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PILER-CR: fast and accurate identification of CRISPR repeats

BMC bioinformatics, 2007-01, Vol.8 (1), p.18-18, Article 18

Edgar, Robert C

2007

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Defining the core Arabidopsis thaliana root microbiome

Nature (London), 2012-08, Vol.488 (7409), p.86-90

2012

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

Nature methods, 2013-10, Vol.10 (10), p.996-998

Edgar, Robert C

2013

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Hybrids of RNA viruses and viroid-like elements replicate in fungi

Nature communications, 2023-05, Vol.14 (1), p.2591-2591, Article 2591

2023

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A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

Microbes and Environments, 2015, Vol.30(2), pp.145-150

2015

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Optimizing substitution matrix choice and gap parameters for sequence alignment

BMC bioinformatics, 2009-12, Vol.10 (1), p.396-396, Article 396

Edgar, Robert C

2009

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Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome

Proceedings of the National Academy of Sciences - PNAS, 2009-08, Vol.106 (31), p.12855-12860

2009

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

Nucleic acids research, 2004, Vol.32 (5), p.1792-1797

Edgar, Robert C

2004

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Antibody repertoire analysis of mouse immunization protocols using microfluidics and molecular genomics

mAbs, 2019-07, Vol.11 (5), p.870-883

2019

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Petabase-scale sequence alignment catalyses viral discovery

Nature (London), 2022-02, Vol.602 (7895), p.142-147

2022

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Quality measures for protein alignment benchmarks

Nucleic acids research, 2010-04, Vol.38 (7), p.2145-2153

Edgar, Robert C

2010

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Multiple sequence alignment

Current opinion in structural biology, 2006-06, Vol.16 (3), p.368-373

2006

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A comparison of scoring functions for protein sequence profile alignment

Bioinformatics, 2004-05, Vol.20 (8), p.1301-1308

2004

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PILER: identification and classification of genomic repeats

Bioinformatics, 2005-06, Vol.21 (suppl-1), p.i152-i158

2005

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Preferential Identification of Agonistic OX40 Antibodies by Using Cell Lysate to Pan Natively Paired, Humanized Mouse-Derived Yeast Surface Display Libraries

Antibodies (Basel), 2019-02, Vol.8 (1), p.17

2019

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Massively parallel interrogation and mining of natively paired human TCRαβ repertoires

Nature biotechnology, 2020-05, Vol.38 (5), p.609-619

2020

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Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Microbiome, 2015-05, Vol.3 (1), p.20-20, Article 20

2015

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Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny

Updating the 97% identity threshold for 16S ribosomal RNA OTUs

Search and clustering orders of magnitude faster than BLAST

Error filtering, pair assembly and error correction for next-generation sequencing reads

Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

UCHIME improves sensitivity and speed of chimera detection

PILER-CR: fast and accurate identification of CRISPR repeats

Defining the core Arabidopsis thaliana root microbiome

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Hybrids of RNA viruses and viroid-like elements replicate in fungi

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

Optimizing substitution matrix choice and gap parameters for sequence alignment

Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Antibody repertoire analysis of mouse immunization protocols using microfluidics and molecular genomics

Petabase-scale sequence alignment catalyses viral discovery

Quality measures for protein alignment benchmarks

Multiple sequence alignment

A comparison of scoring functions for protein sequence profile alignment

PILER: identification and classification of genomic repeats

Preferential Identification of Agonistic OX40 Antibodies by Using Cell Lysate to Pan Natively Paired, Humanized Mouse-Derived Yeast Surface Display Libraries

Massively parallel interrogation and mining of natively paired human TCRαβ repertoires

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

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