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MyDas, an extensible Java DAS server

PloS one, 2012-09, Vol.7 (9), p.e44180-e44180

2012

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Urban-rural difference in the determinants of dietary and energy intake patterns: A case study in West Java, Indonesia

PloS one, 2018-05, Vol.13 (5), p.e0197626-e0197626

2018

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BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

PloS one, 2018-10, Vol.13 (10), p.e0205286-e0205286

2018

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Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

PeerJ (San Francisco, CA), 2020-12, Vol.8, p.e10575-e10575, Article e10575

2020

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TreeVector: scalable, interactive, phylogenetic trees for the web

PloS one, 2010-01, Vol.5 (1), p.e8934-e8934

2010

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Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

PloS one, 2020-05, Vol.15 (5), p.e0233438-e0233438

2020

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Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

PloS one, 2020-09, Vol.15 (9), p.e0239694-e0239694

2020

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GIANT: a cytoscape plugin for modular networks

PloS one, 2014-10, Vol.9 (9), p.e105001-e105001

2014

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CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

PloS one, 2017-01, Vol.12 (1), p.e0170482-e0170482

2017

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iPiG: integrating peptide spectrum matches into genome browser visualizations

PloS one, 2012-12, Vol.7 (12), p.e50246-e50246

2012

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NMRDSP: an accurate prediction of protein shape strings from NMR chemical shifts and sequence data

PloS one, 2013-12, Vol.8 (12), p.e83532-e83532

2013

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CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

PloS one, 2012-08, Vol.7 (8), p.e43287-e43287

2012

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Droplet digital PCR versus real-time PCR for in-house validation of porcine detection and quantification protocol: An artificial recombinant plasmid approach

PloS one, 2023-07, Vol.18 (7), p.e0287712-e0287712

2023

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BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

PloS one, 2012-11, Vol.7 (11), p.e49239-e49239

2012

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Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery

PloS one, 2023-10, Vol.18 (10), p.e0292156-e0292156

2023

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The assessment of molecular dynamics results of three-dimensional RNA aptamer structure prediction

PloS one, 2023-07, Vol.18 (7), p.e0288684-e0288684

2023

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The molecular interaction of six single-stranded DNA aptamers to cardiac troponin I revealed by docking and molecular dynamics simulation

PloS one, 2024-05, Vol.19 (5), p.e0302475

2024

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LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

PloS one, 2013-05, Vol.8 (5), p.e61951-e61951

2013

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FOXO-regulated OSER1 reduces oxidative stress and extends lifespan in multiple species

Nature communications, 2024-08, Vol.15 (1), p.7144-18

2024

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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

PloS one, 2011-09, Vol.6 (9), p.e22594-e22594

2011

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Comparison of WTC dust size on macrophage inflammatory cytokine release in vivo and in vitro

PloS one, 2012-07, Vol.7 (7), p.e40016

2012

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NeisseriaBase: a specialised Neisseria genomic resource and analysis platform

PeerJ (San Francisco, CA), 2016-03, Vol.4, p.e1698-e1698, Article e1698

2016

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Antimicrobial potentials of Pandanus amaryllifolius Roxb.: Phytochemical profiling, antioxidant, and molecular docking studies

PloS one, 2024-08, Vol.19 (8), p.e0305348

2024

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CATO: The Clone Alignment Tool

PloS one, 2016-07, Vol.11 (7), p.e0159586-e0159586

2016

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Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

PloS one, 2013-03, Vol.8 (3), p.e58759-e58759

2013

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MyDas, an extensible Java DAS server

Urban-rural difference in the determinants of dietary and energy intake patterns: A case study in West Java, Indonesia

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

TreeVector: scalable, interactive, phylogenetic trees for the web

Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

GIANT: a cytoscape plugin for modular networks

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

iPiG: integrating peptide spectrum matches into genome browser visualizations

NMRDSP: an accurate prediction of protein shape strings from NMR chemical shifts and sequence data

CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

Droplet digital PCR versus real-time PCR for in-house validation of porcine detection and quantification protocol: An artificial recombinant plasmid approach

BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery

The assessment of molecular dynamics results of three-dimensional RNA aptamer structure prediction

The molecular interaction of six single-stranded DNA aptamers to cardiac troponin I revealed by docking and molecular dynamics simulation

LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

FOXO-regulated OSER1 reduces oxidative stress and extends lifespan in multiple species

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

Comparison of WTC dust size on macrophage inflammatory cytokine release in vivo and in vitro

NeisseriaBase: a specialised Neisseria genomic resource and analysis platform

Antimicrobial potentials of Pandanus amaryllifolius Roxb.: Phytochemical profiling, antioxidant, and molecular docking studies

CATO: The Clone Alignment Tool

Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

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