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Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data

Bioinformatics, 2015-09, Vol.31 (18), p.3043-3045

2015

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Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq

PLoS computational biology, 2020-02, Vol.16 (2), p.e1007119-e1007119

2020

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Bridging cancer biology with the clinic: relative expression of a GRHL2-mediated gene-set pair predicts breast cancer metastasis

PloS one, 2013-02, Vol.8 (2), p.e56195-e56195

2013

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GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns

Bioinformatics (Oxford, England), 2011-05, Vol.27 (10), p.1444-1446

2011

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Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma

BMC systems biology, 2017-10, Vol.11 (Suppl 5), p.92-92, Article 92

2017

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Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice

PloS one, 2012-01, Vol.7 (1), p.e29579-e29579

2012

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Assessment of beneficial effects and identification of host adaptation-associated genes of Ligilactobacillus salivarius isolated from badgers

BMC genomics, 2023-09, Vol.24 (1), p.1-530, Article 530

2023

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Proteome Dynamics Analysis Reveals the Potential Mechanisms of Salinity and Drought Response during Seed Germination and Seedling Growth in Tamarix hispida

Genes, 2023-03, Vol.14 (3), p.656

2023

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Identification and Functional Analysis of Tomato CIPK Gene Family

International journal of molecular sciences, 2019-12, Vol.21 (1), p.110

2019

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CRISPR/Cas9-mediated targeted mutagenesis of GmSPL9 genes alters plant architecture in soybean

BMC plant biology, 2019-04, Vol.19 (1), p.131-12, Article 131

2019

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Interaction of temperature and salinity on the expression of immunity factors in different tissues of juvenile turbot Scophthalmus maximus based on response surface methodology

Chinese journal of oceanology and limnology, 2015-01, Vol.33 (1), p.28-36

2015

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AvrA Exerts Inhibition of NF-κB Pathway in Its Naïve Salmonella Serotype through Suppression of p-JNK and Beclin-1 Molecules

International journal of molecular sciences, 2020-08, Vol.21 (17), p.6063

2020

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Identification of Quantitative Trait Locus and Candidate Genes for Drought Tolerance in a Soybean Recombinant Inbred Line Population

International journal of molecular sciences, 2022-09, Vol.23 (18), p.10828

2022

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Identification and Functional Analysis of Tomato TPR Gene Family

International journal of molecular sciences, 2021-01, Vol.22 (2), p.758

2021

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Overexpression of GmWRI1b in soybean stably improves plant architecture and associated yield parameters, and increases total seed oil production under field conditions

Plant biotechnology journal, 2020-08, Vol.18 (8), p.1639-1641

2020

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Genome-wide survey of the soybean GATA transcription factor gene family and expression analysis under low nitrogen stress

PloS one, 2015-04, Vol.10 (4), p.e0125174

2015

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Stability evaluation of reference genes for gene expression analysis by RT-qPCR in soybean under different conditions

PloS one, 2017-12, Vol.12 (12), p.e0189405-e0189405

2017

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A pair of atypical NLR-encoding genes confers Asian soybean rust resistance in soybean

Nature communications, 2024-04, Vol.15 (1), p.3310-11, Article 3310

2024

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RNA-Seq and Comparative Transcriptomic Analyses of Asian Soybean Rust Resistant and Susceptible Soybean Genotypes Provide Insights into Identifying Disease Resistance Genes

International journal of molecular sciences, 2023-08, Vol.24 (17), p.13450

2023

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Comparative transcriptomic analysis reveals mechanisms of divergence in osmotic regulation of the turbot Scophthalmus maximus

Fish physiology and biochemistry, 2020-08, Vol.46 (4), p.1519-1536

2020

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Genome-Wide Identification and Characterization of Soybean GmLOR Gene Family and Expression Analysis in Response to Abiotic Stresses

International journal of molecular sciences, 2021-11, Vol.22 (22), p.12515

2021

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Genome-wide survey of soybean papain-like cysteine proteases and their expression analysis in root nodule symbiosis

BMC plant biology, 2020-11, Vol.20 (1), p.517-517, Article 517

2020

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Genome-Wide Investigation and Expression Profiling Under Abiotic Stresses of a Soybean Unknown Function (DUF21) and Cystathionine-β-Synthase (CBS) Domain-Containing Protein Family

Biochemical genetics, 2021-02, Vol.59 (1), p.83-113

2021

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Hsa_circ_0068307 mediates bladder cancer stem cell-like properties via miR-147/c-Myc axis regulation

Cancer cell international, 2020-05, Vol.20 (1), p.151-151, Article 151

2020

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Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq

Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm

Bridging cancer biology with the clinic: relative expression of a GRHL2-mediated gene-set pair predicts breast cancer metastasis

GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns

Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma

Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice

Assessment of beneficial effects and identification of host adaptation-associated genes of Ligilactobacillus salivarius isolated from badgers

Proteome Dynamics Analysis Reveals the Potential Mechanisms of Salinity and Drought Response during Seed Germination and Seedling Growth in Tamarix hispida

Identification and Functional Analysis of Tomato CIPK Gene Family

CRISPR/Cas9-mediated targeted mutagenesis of GmSPL9 genes alters plant architecture in soybean

Interaction of temperature and salinity on the expression of immunity factors in different tissues of juvenile turbot Scophthalmus maximus based on response surface methodology

AvrA Exerts Inhibition of NF-κB Pathway in Its Naïve Salmonella Serotype through Suppression of p-JNK and Beclin-1 Molecules

Identification of Quantitative Trait Locus and Candidate Genes for Drought Tolerance in a Soybean Recombinant Inbred Line Population

Identification and Functional Analysis of Tomato TPR Gene Family

Overexpression of GmWRI1b in soybean stably improves plant architecture and associated yield parameters, and increases total seed oil production under field conditions

Genome-wide survey of the soybean GATA transcription factor gene family and expression analysis under low nitrogen stress

Stability evaluation of reference genes for gene expression analysis by RT-qPCR in soybean under different conditions

A pair of atypical NLR-encoding genes confers Asian soybean rust resistance in soybean

RNA-Seq and Comparative Transcriptomic Analyses of Asian Soybean Rust Resistant and Susceptible Soybean Genotypes Provide Insights into Identifying Disease Resistance Genes

Comparative transcriptomic analysis reveals mechanisms of divergence in osmotic regulation of the turbot Scophthalmus maximus

Genome-Wide Identification and Characterization of Soybean GmLOR Gene Family and Expression Analysis in Response to Abiotic Stresses

Genome-wide survey of soybean papain-like cysteine proteases and their expression analysis in root nodule symbiosis

Genome-Wide Investigation and Expression Profiling Under Abiotic Stresses of a Soybean Unknown Function (DUF21) and Cystathionine-β-Synthase (CBS) Domain-Containing Protein Family

Hsa_circ_0068307 mediates bladder cancer stem cell-like properties via miR-147/c-Myc axis regulation

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