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Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral therapy

PLoS pathogens, 2017-05, Vol.13 (5), p.e1006359-e1006359

2017

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No evidence for ongoing replication on ART in SIV-infected macaques

Nature communications, 2024-06, Vol.15 (1), p.5093-14

2024

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Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir

PLoS pathogens, 2021-06, Vol.17 (6), p.e1009686

2021

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Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (1), p.494-502

2020

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Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes

PLoS pathogens, 2019-04, Vol.15 (4), p.e1007632-e1007632

2019

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Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population

PLoS computational biology, 2015-12, Vol.11 (12), p.e1004625-e1004625

2015

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Low-level alternative tRNA priming of reverse transcription of HIV-1 and SIV in vivo

Retrovirology, 2019-04, Vol.16 (1), p.11-11, Article 11

2019

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Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages

Retrovirology, 2014-10, Vol.11 (1), p.81-81, Article 81

2014

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In Vivo Validation of the Viral Barcoding of Simian Immunodeficiency Virus SIVmac239 and the Development of New Barcoded SIV and Subtype B and C Simian-Human Immunodeficiency Viruses

Journal of virology, 2019-12, Vol.94 (1)

2019

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Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy

The Journal of clinical investigation, 2021-03, Vol.131 (6), p.1-13

2021

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Defining early SIV replication and dissemination dynamics following vaginal transmission

Science advances, 2019-05, Vol.5 (5), p.eaav7116-eaav7116

2019

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Treatment failure and drug resistance is more frequent in HIV-1 subtype D versus subtype A-infected Ugandans over a 10-year study period

AIDS (London), 2013-07, Vol.27 (12), p.1899-1909

2013

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Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population: e1004625

PLoS computational biology, 2015-12, Vol.11 (12)

2015

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Sequencing of Kaposi's Sarcoma Herpesvirus

PLoS pathogens, 2024-07, Vol.20 (7), p.e1012338

2024

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Abstract LB155: In vivo imaging of vascular pathology in mouse orthotopic glioma model using functional ultrasound

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (8_Supplement), p.LB155-LB155

2023

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Modeling HIV-1 Dynamics and Fitness in Cell Culture Across Scales

Bulletin of mathematical biology, 2014-02, Vol.76 (2), p.486-514

2014

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Divergent Evolution in Reverse Transcriptase (RT) of HIV-1 Group O and M Lineages: Impact on Structure, Fitness, and Sensitivity to Nonnucleoside RT Inhibitors

Journal of Virology, 2010-10, Vol.84 (19), p.9817-9830

2010

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Urinary Biomarkers Indicative of Apoptosis and Acute Kidney Injury in the Critically Ill

PloS one, 2016-02, Vol.11 (2), p.e0149956-e0149956

2016

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Basal Breast Cancer Molecular Subtype Predicts for Lower Incidence of Axillary Lymph Node Metastases in Primary Breast Cancer

Clinical breast cancer, 2008-06, Vol.8 (3), p.249-256

2008

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A hybrid stochastic–deterministic computational model accurately describes spatial dynamics and virus diffusion in HIV-1 growth competition assay

Journal of theoretical biology, 2012-11, Vol.312, p.120-132

2012

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Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples

Virus evolution, 2020-07, Vol.6 (2), p.veaa047

2020

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Cerebral blood volume alterations in the perilesional areas in the rat brain after traumatic brain injury-comparison with behavioral outcome

Journal of cerebral blood flow and metabolism, 2010-07, Vol.30 (7), p.1318-1328

2010

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Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral therapy

No evidence for ongoing replication on ART in SIV-infected macaques

Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir

Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape

Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir

Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population

Low-level alternative tRNA priming of reverse transcription of HIV-1 and SIV in vivo

Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages

In Vivo Validation of the Viral Barcoding of Simian Immunodeficiency Virus SIVmac239 and the Development of New Barcoded SIV and Subtype B and C Simian-Human Immunodeficiency Viruses

Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy

Defining early SIV replication and dissemination dynamics following vaginal transmission

Treatment failure and drug resistance is more frequent in HIV-1 subtype D versus subtype A-infected Ugandans over a 10-year study period

Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population: e1004625

Sequencing of Kaposi's Sarcoma Herpesvirus

Abstract LB155: In vivo imaging of vascular pathology in mouse orthotopic glioma model using functional ultrasound

Sequencing of Kaposi’s Sarcoma Herpesvirus (KSHV) genomes from persons of diverse ethnicities and provenances with KSHV-associated diseases demonstrate multiple infections, novel polymorphisms, and low intra-host variance

Modeling HIV-1 Dynamics and Fitness in Cell Culture Across Scales

Divergent Evolution in Reverse Transcriptase (RT) of HIV-1 Group O and M Lineages: Impact on Structure, Fitness, and Sensitivity to Nonnucleoside RT Inhibitors

Urinary Biomarkers Indicative of Apoptosis and Acute Kidney Injury in the Critically Ill

Basal Breast Cancer Molecular Subtype Predicts for Lower Incidence of Axillary Lymph Node Metastases in Primary Breast Cancer

A hybrid stochastic–deterministic computational model accurately describes spatial dynamics and virus diffusion in HIV-1 growth competition assay

Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples

Cerebral blood volume alterations in the perilesional areas in the rat brain after traumatic brain injury-comparison with behavioral outcome

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