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Genomic Control Process: Development and Evolution

1, 2015

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Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (30), p.E4075-E4084

2015

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Global regulatory logic for specification of an embryonic cell lineage

Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (16), p.5955-5962

2008

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Gene Regulatory Networks for Development

Proceedings of the National Academy of Sciences - PNAS, 2005-04, Vol.102 (14), p.4936-4942

2005

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Sponge grade body fossil with cellular resolution dating 60 Myr before the Cambrian

Proceedings of the National Academy of Sciences - PNAS, 2015-03, Vol.112 (12), p.E1453-E1460

2015

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Predictive computation of genomic logic processing functions in embryonic development

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (41), p.16434-16442

2012

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Properties of developmental gene regulatory networks

Proceedings of the National Academy of Sciences - PNAS, 2008-12, Vol.105 (51), p.20063-20066

2008

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Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids

Development (Cambridge), 2018-12, Vol.145 (24)

2018

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Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution

Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (16), p.6091-6096

2008

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Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis

Genome research, 2012-10, Vol.22 (10), p.2079-2087

2012

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A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

Developmental biology, 2012-04, Vol.364 (1), p.77-87

2012

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Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis

Developmental biology, 2012-04, Vol.364 (2), p.259-267

2012

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Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (47), p.E5029-E5038

2014

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Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

Developmental biology, 2013-03, Vol.375 (1), p.92-104

2013

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Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (10), p.3661-3661

2014

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Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology

Current topics in developmental biology, 2016-01, Vol.117, p.237

2016

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Evolutionary plasticity of developmental gene regulatory network architecture

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19404-19409

2007

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cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification

Developmental biology, 2006-09, Vol.297 (2), p.587-602

2006

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New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN

Developmental biology, 2013-10, Vol.382 (1), p.268-279

2013

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Sea urchin Forkhead gene family: Phylogeny and embryonic expression

Developmental biology, 2006-12, Vol.300 (1), p.49-62

2006

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Genome-wide assessment of differential effector gene use in embryogenesis

Development (Cambridge), 2015-11, Vol.142 (22), p.3892-3901

2015

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Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo

Proceedings of the National Academy of Sciences - PNAS, 2008-12, Vol.105 (51), p.20089-20094

2008

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Modeling transcriptional regulatory networks

BioEssays, 2002-12, Vol.24 (12), p.1118-1129

2002

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Logic Functions of the Genomic cis-Regulatory Code

Proceedings of the National Academy of Sciences - PNAS, 2005-04, Vol.102 (14), p.4954-4959

2005

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Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

Developmental biology, 2012-09, Vol.369 (2), p.377-385

2012

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Genomic Control Process: Development and Evolution

Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

Global regulatory logic for specification of an embryonic cell lineage

Gene Regulatory Networks for Development

Sponge grade body fossil with cellular resolution dating 60 Myr before the Cambrian

Predictive computation of genomic logic processing functions in embryonic development

Properties of developmental gene regulatory networks

Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids

Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution

Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis

A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis

Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology

Evolutionary plasticity of developmental gene regulatory network architecture

cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification

New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN

Sea urchin Forkhead gene family: Phylogeny and embryonic expression

Genome-wide assessment of differential effector gene use in embryogenesis

Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo

Modeling transcriptional regulatory networks

Logic Functions of the Genomic cis-Regulatory Code

Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

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