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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

The Plant cell, 2016-12, Vol.28 (12), p.2937-2951

2016

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The long reads ahead: de novo genome assembly using the MinION

F1000 research, 2017, Vol.6, p.1083-1083

2017

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Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse

BMC bioinformatics, 2018-10, Vol.19 (1), p.373-373, Article 373

2018

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An analysis of characterized plant sesquiterpene synthases

Phytochemistry (Oxford), 2019-02, Vol.158, p.157-165

2019

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Efficient inference of homologs in large eukaryotic pan-proteomes

BMC bioinformatics, 2018-09, Vol.19 (1), p.340-340, Article 340

2018

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Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

PLoS genetics, 2020-09, Vol.16 (9), p.e1009027-e1009027

2020

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Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence Reads

Frontiers in genetics, 2019-04, Vol.10, p.335-335

2019

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Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

1. Aufl., 2005

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Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005734

2017

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Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 2; peer review: 1 approved, 2 approved with reservations]

F1000 research, 2023, Vol.11, p.802-802

2023

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Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)

2021

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A survey of functional genomic variation in domesticated chickens

Genetics selection evolution (Paris), 2018-04, Vol.50 (1), p.17-17, Article 17

2018

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Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

PloS one, 2017, Vol.12 (4), p.e0175670-e0175670

2017

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Shifts in growth strategies reflect tradeoffs in cellular economics

Molecular systems biology, 2009, Vol.5 (1), p.323-n/a

2009

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Machine learning in plant science and plant breeding

iScience, 2021-01, Vol.24 (1), p.101890-101890, Article 101890

2021

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Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

BMC bioinformatics, 2020-06, Vol.21 (1), p.253-253, Article 253

2020

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Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

Bangjun Lei, Guangzhu Xu, Ming Feng, Yaobin Zou, Ferdinand van der Heijden, Dick de Ridder, David M. J. Tax

Second edition., 2017

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Minimum error correction-based haplotype assembly: Considerations for long read data

PloS one, 2020-06, Vol.15 (6), p.e0234470-e0234470

2020

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TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics, 2018-11, Vol.34 (22), p.3864-3872

2018

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BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Gigascience, 2021-01, Vol.10 (1)

2021

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Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

Cell, 2018-08, Vol.174 (5), p.1188-1199.e14

2018

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Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshops, SSPR 2004 and SPR 2004, Lisbon, Portugal, August 18-20, 2004 Proceedings

1, 2004

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Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning

Nucleic acids research, 2023-03, Vol.51 (5), p.2363

2023

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Domestication Shapes Recombination Patterns in Tomato

Molecular biology and evolution, 2022-01, Vol.39 (1)

2022

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Topology of molecular interaction networks

BMC systems biology, 2013-09, Vol.7 (1), p.90-90

2013

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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

The long reads ahead: de novo genome assembly using the MinION

Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse

An analysis of characterized plant sesquiterpene synthases

Efficient inference of homologs in large eukaryotic pan-proteomes

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence Reads

Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 2; peer review: 1 approved, 2 approved with reservations]

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

A survey of functional genomic variation in domesticated chickens

Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia

Shifts in growth strategies reflect tradeoffs in cellular economics

Machine learning in plant science and plant breeding

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

Minimum error correction-based haplotype assembly: Considerations for long read data

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshops, SSPR 2004 and SPR 2004, Lisbon, Portugal, August 18-20, 2004 Proceedings

Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning

Domestication Shapes Recombination Patterns in Tomato

Topology of molecular interaction networks

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