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Issues and current standards of controls in microbiome research

FEMS microbiology ecology, 2019-05, Vol.95 (5), p.1

2019

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Use of Shotgun Metagenomics and Metabolomics to Evaluate the Impact of Glyphosate or Roundup MON 52276 on the Gut Microbiota and Serum Metabolome of Sprague-Dawley Rats

Environmental health perspectives, 2021-01, Vol.129 (1), p.17005

2021

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The Preterm Gut Microbiota: An Inconspicuous Challenge in Nutritional Neonatal Care

Frontiers in cellular and infection microbiology, 2019-04, Vol.9, p.85-85

2019

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Host Immune Responses to Clostridioides difficile : Toxins and Beyond

Frontiers in microbiology, 2021-12, Vol.12, p.804949-804949

2021

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Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins

Environmental health, 2022-05, Vol.21 (1), p.46-14, Article 46

2022

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Mechanistic Insights in the Success of Fecal Microbiota Transplants for the Treatment of Clostridium difficile Infections

Frontiers in microbiology, 2018-06, Vol.9, p.1242-1242

2018

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Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients

Gastroenterology (New York, N.Y. 1943), 2021-10, Vol.161 (4), p.1218-1228.e5

2021

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Fecal Microbiota Transplantation for Immune Checkpoint Inhibitor-Induced Colitis Is Safe and Contributes to Recovery: Two Case Reports

Journal of immunotherapy (1997), 2023-07, Vol.46 (6), p.216-220

2023

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Enrichment of colibactin-associated mutational signatures in unexplained colorectal polyposis patients

BMC cancer, 2024-01, Vol.24 (1), p.104-104, Article 104

2024

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Association between duration of intravenous antibiotic administration and early-life microbiota development in late-preterm infants

European journal of clinical microbiology & infectious diseases, 2018-03, Vol.37 (3), p.475-483

2018

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Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense

Scientific reports, 2021-06, Vol.11 (1), p.12808-12808, Article 12808

2021

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Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection

Genome medicine, 2024-02, Vol.16 (1), p.37-16, Article 37

2024

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Multidrug-resistant organisms in patients from Ukraine in the Netherlands, March to August 2022

Euro surveillance : bulletin européen sur les maladies transmissibles, 2022-12, Vol.27 (50), p.1

2022

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Intestinal permeability before and after albendazole treatment in low and high socioeconomic status schoolchildren in Makassar, Indonesia

Scientific reports, 2022-03, Vol.12 (1), p.3394-3394, Article 3394

2022

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Impact of the COVID-19 pandemic on prevalence of highly resistant microorganisms in hospitalised patients in the Netherlands, March 2020 to August 2022

Euro surveillance : bulletin européen sur les maladies transmissibles, 2023-12, Vol.28 (50), p.2

2023

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The vulvar microbiome in lichen sclerosus and high-grade intraepithelial lesions

Frontiers in microbiology, 2023-11, Vol.14, p.1264768-1264768

2023

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Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home

Genome medicine, 2021-04, Vol.13 (1), p.54-54, Article 54

2021

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The vaginal microbiota in the course of bacterial vaginosis treatment

European journal of clinical microbiology & infectious diseases, 2021-03, Vol.40 (3), p.651-656

2021

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Multi-omics phenotyping of the gut-liver axis reveals metabolic perturbations from a low-dose pesticide mixture in rats

Communications biology, 2021-04, Vol.4 (1), p.471-14, Article 471

2021

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Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants

Molecular & cellular proteomics, 2017-09, Vol.16 (9), p.1610-1620

2017

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Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino Children

Microorganisms (Basel), 2020-07, Vol.8 (7), p.1015

2020

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The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile

Microorganisms (Basel), 2020-05, Vol.8 (5), p.677

2020

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Fungal and bacterial gut microbiota differ between Clostridioides difficile colonization and infection

Microbiome research reports, 2024, Vol.3 (1)

2024

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Biochemical and functional characterization of recombinant fungal immunomodulatory proteins (rFIPs)

International immunopharmacology, 2013-01, Vol.15 (1), p.167-175

2013

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Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control study

The Lancet. Microbe, 2022-06, Vol.3 (6), p.e443-e451

2022

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Issues and current standards of controls in microbiome research

Use of Shotgun Metagenomics and Metabolomics to Evaluate the Impact of Glyphosate or Roundup MON 52276 on the Gut Microbiota and Serum Metabolome of Sprague-Dawley Rats

The Preterm Gut Microbiota: An Inconspicuous Challenge in Nutritional Neonatal Care

Host Immune Responses to Clostridioides difficile : Toxins and Beyond

Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins

Mechanistic Insights in the Success of Fecal Microbiota Transplants for the Treatment of Clostridium difficile Infections

Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients

Fecal Microbiota Transplantation for Immune Checkpoint Inhibitor-Induced Colitis Is Safe and Contributes to Recovery: Two Case Reports

Enrichment of colibactin-associated mutational signatures in unexplained colorectal polyposis patients

Association between duration of intravenous antibiotic administration and early-life microbiota development in late-preterm infants

Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense

Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection

Multidrug-resistant organisms in patients from Ukraine in the Netherlands, March to August 2022

Intestinal permeability before and after albendazole treatment in low and high socioeconomic status schoolchildren in Makassar, Indonesia

Impact of the COVID-19 pandemic on prevalence of highly resistant microorganisms in hospitalised patients in the Netherlands, March 2020 to August 2022

The vulvar microbiome in lichen sclerosus and high-grade intraepithelial lesions

Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home

The vaginal microbiota in the course of bacterial vaginosis treatment

Multi-omics phenotyping of the gut-liver axis reveals metabolic perturbations from a low-dose pesticide mixture in rats

Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants

Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino Children

The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile

Fungal and bacterial gut microbiota differ between Clostridioides difficile colonization and infection

Biochemical and functional characterization of recombinant fungal immunomodulatory proteins (rFIPs)

Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control study

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