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Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell

Chemical reviews, 2016-06, Vol.116 (11), p.6516-6551

2016

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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

PLoS Computational Biology, 2016-04, Vol.12 (4), p.e1004619

2016

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Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?

Chemical reviews, 2008-04, Vol.108 (4), p.1225-1244

2008

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Stabilities and Conformations of Alzheimer's β-Amyloid Peptide Oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence Effects

Proceedings of the National Academy of Sciences - PNAS, 2002-10, Vol.99 (22), p.14126-14131

2002

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The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

Structure (London), 2009-08, Vol.17 (8), p.1042-1050

2009

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Protein dynamics and conformational selection in bidirectional signal transduction

BMC biology, 2012-01, Vol.10 (1), p.2-2, Article 2

2012

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Conformational Distribution and α‑Helix to β‑Sheet Transition of Human Amylin Fragment Dimer

Biomacromolecules, 2014-01, Vol.15 (1), p.122-131

2014

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Recent Progress in Antibody Epitope Prediction

Antibodies (Basel), 2023-08, Vol.12 (3), p.52

2023

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Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces

Proceedings of the National Academy of Sciences - PNAS, 2003-05, Vol.100 (10), p.5772-5777

2003

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Re-Engineering Therapeutic Anti-Aβ Monoclonal Antibody to Target Amyloid Light Chain

International journal of molecular sciences, 2024-02, Vol.25 (3), p.1593

2024

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Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody

Biomolecules (Basel, Switzerland), 2022-07, Vol.12 (7), p.1011

2022

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In Silico Methods in Antibody Design

Antibodies (Basel), 2018-06, Vol.7 (3), p.22

2018

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Molecular Recognition between Aβ-Specific Single-Domain Antibody and Aβ Misfolded Aggregates

Antibodies (Basel), 2018-07, Vol.7 (3), p.25

2018

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Short Peptide Amyloid Organization: Stabilities and Conformations of the Islet Amyloid Peptide NFGAIL

Biophysical journal, 2003-03, Vol.84 (3), p.1884-1894

2003

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Bioinformatics study of cancer-related mutations within p53 phosphorylation site motifs

International journal of molecular sciences, 2014-07, Vol.15 (8), p.13275-13298

2014

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Folding and Binding Cascades: Shifts in Energy Landscapes

Proceedings of the National Academy of Sciences - PNAS, 1999-08, Vol.96 (18), p.9970-9972

1999

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Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells

Communications biology, 2023-07, Vol.6 (1), p.712-712, Article 712

2023

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Cooperativity among short amyloid stretches in long amyloidogenic sequences

PloS one, 2012-06, Vol.7 (6), p.e39369

2012

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Local and global anatomy of antibody‐protein antigen recognition

Journal of molecular recognition, 2018-05, Vol.31 (5), p.e2693-n/a

2018

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The distinct structural preferences of tau protein repeat domains

Chemical communications (Cambridge, England), 2018-05, Vol.54 (45), p.5700-5703

2018

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Dynamic Allostery: Linkers Are Not Merely Flexible

Structure (London), 2011-07, Vol.19 (7), p.907-917

2011

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The Stability and Dynamics of the Human Calcitonin Amyloid Peptide DFNKF

Biophysical journal, 2004-07, Vol.87 (1), p.146-158

2004

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Allosteric Conformational Barcodes Direct Signaling in the Cell

Structure (London), 2013-09, Vol.21 (9), p.1509-1521

2013

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Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein

Journal of computational biology, 2015-09, Vol.22 (9), p.876-886

2015

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Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell

Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics

Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer’s Disease, Parkinson’s Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis

Stabilities and Conformations of Alzheimer's β-Amyloid Peptide Oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence Effects

The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

Protein dynamics and conformational selection in bidirectional signal transduction

Conformational Distribution and α‑Helix to β‑Sheet Transition of Human Amylin Fragment Dimer

Recent Progress in Antibody Epitope Prediction

Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces

Re-Engineering Therapeutic Anti-Aβ Monoclonal Antibody to Target Amyloid Light Chain

Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody

In Silico Methods in Antibody Design

Molecular Recognition between Aβ-Specific Single-Domain Antibody and Aβ Misfolded Aggregates

Short Peptide Amyloid Organization: Stabilities and Conformations of the Islet Amyloid Peptide NFGAIL

Bioinformatics study of cancer-related mutations within p53 phosphorylation site motifs

Folding and Binding Cascades: Shifts in Energy Landscapes

Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells

Cooperativity among short amyloid stretches in long amyloidogenic sequences

Local and global anatomy of antibody‐protein antigen recognition

The distinct structural preferences of tau protein repeat domains

Dynamic Allostery: Linkers Are Not Merely Flexible

The Stability and Dynamics of the Human Calcitonin Amyloid Peptide DFNKF

Allosteric Conformational Barcodes Direct Signaling in the Cell

Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein

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