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2SNV: Quasispecies reconstruction from PacBio reads

2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2015, p.1-1

2015

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Abstract 4688: Single-cell discrimination of altered human T cell states in the bladder tumor microenvironment

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.4688-4688

2018

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Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.7011-7011

2024

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Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

Nucleic acids research, 2021-09, Vol.49 (17), p.e102-e102

2021

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Accurate viral population assembly from ultra-deep sequencing data

Bioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.i329-i337

2014

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Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

Trends in biotechnology (Regular ed.), 2017-10, Vol.35 (10), p.901-903

2017

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Algorithms for transcriptome quantification and reconstruction from RNA-Seq data

Mangul, Serghei

2012

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Analytical code sharing practices in biomedical research

PeerJ. Computer science, 2024-06, Vol.10, p.e2066, Article e2066

2024

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Ancestral diversity is limited in published T cell receptor sequencing studies

Immunity (Cambridge, Mass.), 2021-10, Vol.54 (10), p.2177-2179

2021

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Application of Traditional Vaccine Development Strategies to SARS-CoV-2

mSystems, 2023-04, Vol.8 (2), p.e0092722

2023

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Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

Nature communications, 2020-09, Vol.11 (1), p.1-1, Article 4499

2020

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Benchmarking of computational error-correction methods for next-generation sequencing data

Genome Biology, 2020-03, Vol.21 (1), p.71-71, Article 71

2020

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Benchmarking of computational error-correction methods for next-generation sequencing data

Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, 2020, p.1-1

2020

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Challenges and recommendations to improve the installability and archival stability of omics computational tools

PLoS biology, 2019-06, Vol.17 (6), p.e3000333

2019

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Climate warming, environmental degradation and pollution as drivers of antibiotic resistance

Environmental pollution (1987), 2024-04, Vol.346, p.123649-123649, Article 123649

2024

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The Coming of Age of Nucleic Acid Vaccines during COVID-19

mSystems, 2023-04, Vol.8 (2), p.e0092822-e0092822

2023

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A comprehensive benchmarking of WGS-based deletion structural variant callers

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese

Molecular biology and evolution, 2018-11, Vol.35 (11), p.2736-2750

2018

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Correction to: Improving the usability and comprehensiveness of microbial databases

BMC biology, 2020-07, Vol.18 (1), p.1-92, Article 92

2020

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Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

Gigascience, 2020-09, Vol.9 (9)

2020

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CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma

Scientific reports, 2016-06, Vol.6 (1), p.29032-29032, Article 29032

2016

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Data Availability of Open T-Cell Receptor Repertoire Data, a Systematic Assessment

Frontiers in Systems Biology (Online), 2022-06, Vol.2

2022

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Detection of viral gene expression in risk‐stratified biopsies reveals no active HPV in cutaneous squamous cell carcinoma

Experimental dermatology, 2021-11, Vol.30 (11), p.1711-1716

2021

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Deterministic regression algorithm for transcriptome frequency estimation

2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2014, p.1-1

2014

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2SNV: Quasispecies reconstruction from PacBio reads

Abstract 4688: Single-cell discrimination of altered human T cell states in the bladder tumor microenvironment

Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

Accurate viral population assembly from ultra-deep sequencing data

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

Algorithms for transcriptome quantification and reconstruction from RNA-Seq data

Analytical code sharing practices in biomedical research

Ancestral diversity is limited in published T cell receptor sequencing studies

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

Benchmarking of computational error-correction methods for next-generation sequencing data

Benchmarking of computational error-correction methods for next-generation sequencing data

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Climate warming, environmental degradation and pollution as drivers of antibiotic resistance

The Coming of Age of Nucleic Acid Vaccines during COVID-19

A comprehensive benchmarking of WGS-based deletion structural variant callers

A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese

Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure"

Correction to: Improving the usability and comprehensiveness of microbial databases

Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma

Data Availability of Open T-Cell Receptor Repertoire Data, a Systematic Assessment

Detection of viral gene expression in risk‐stratified biopsies reveals no active HPV in cutaneous squamous cell carcinoma

Deterministic regression algorithm for transcriptome frequency estimation

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