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PanTools v3: functional annotation, classification and phylogenomics

Bioinformatics, 2022-09, Vol.38 (18), p.4403-4405

2022

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Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Frontiers in artificial intelligence, 2022-06, Vol.5, p.959470-959470

2022

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Geometricus represents protein structures as shape-mers derived from moment invariants

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i718-i725

2020

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GeneNoteBook, a collaborative notebook for comparative genomics

Bioinformatics, 2019-11, Vol.35 (22), p.4779-4781

2019

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poreTally: run and publish de novo nanopore assembler benchmarks

Bioinformatics, 2019-08, Vol.35 (15), p.2663-2664

2019

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Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2036-2042

2019

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TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics, 2018-11, Vol.34 (22), p.3864-3872

2018

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Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.118-135

2018

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Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005734

2017

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PanTools: representation, storage and exploration of pan-genomic data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i487-i493

2016

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ACE: accurate correction of errors using K-mer tries

Bioinformatics, 2015-10, Vol.31 (19), p.3216-3218

2015

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Insight into neutral and disease-associated human genetic variants through interpretable predictors

PloS one, 2015-03, Vol.10 (3), p.e0120729-e0120729

2015

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Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

Bioinformatics, 2013-11, Vol.29 (22), p.2826-2834

2013

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De novo detection of copy number variation by co-assembly

Bioinformatics, 2012-12, Vol.28 (24), p.3195-3202

2012

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Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger

PloS one, 2012-10, Vol.7 (10), p.e45869-e45869

2012

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GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1429-1437

2012

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Epithelial Area Detection in Cytokeratin Microscopic Images Using MSER Segmentation in an Anisotropic Pyramid

Pattern Recognition in Bioinformatics, p.318-329

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Shape Matching by Localized Calculations of Quasi-Isometric Subsets, with Applications to the Comparison of Protein Binding Patches

Pattern Recognition in Bioinformatics, p.272-283

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Automatic Localization of Interest Points in Zebrafish Images with Tree-Based Methods

Pattern Recognition in Bioinformatics, p.179-190

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Identification of Biomarkers for Prostate Cancer Prognosis Using a Novel Two-Step Cluster Analysis

Pattern Recognition in Bioinformatics, p.63-74

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Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis

Pattern Recognition in Bioinformatics, p.247-259

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Biclustering of Expression Microarray Data Using Affinity Propagation

Pattern Recognition in Bioinformatics, p.13-24

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PAAA: A Progressive Iterative Alignment Algorithm Based on Anchors

Pattern Recognition in Bioinformatics, p.296-305

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Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions

Pattern Recognition in Bioinformatics, p.284-295

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Stability of Inferring Gene Regulatory Structure with Dynamic Bayesian Networks

Pattern Recognition in Bioinformatics, p.237-246

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PanTools v3: functional annotation, classification and phylogenomics

Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Geometricus represents protein structures as shape-mers derived from moment invariants

GeneNoteBook, a collaborative notebook for comparative genomics

poreTally: run and publish de novo nanopore assembler benchmarks

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Computational pan-genomics: status, promises and challenges

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity

PanTools: representation, storage and exploration of pan-genomic data

ACE: accurate correction of errors using K-mer tries

Insight into neutral and disease-associated human genetic variants through interpretable predictors

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

De novo detection of copy number variation by co-assembly

Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Epithelial Area Detection in Cytokeratin Microscopic Images Using MSER Segmentation in an Anisotropic Pyramid

Shape Matching by Localized Calculations of Quasi-Isometric Subsets, with Applications to the Comparison of Protein Binding Patches

Automatic Localization of Interest Points in Zebrafish Images with Tree-Based Methods

Identification of Biomarkers for Prostate Cancer Prognosis Using a Novel Two-Step Cluster Analysis

Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis

Biclustering of Expression Microarray Data Using Affinity Propagation

PAAA: A Progressive Iterative Alignment Algorithm Based on Anchors

Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions

Stability of Inferring Gene Regulatory Structure with Dynamic Bayesian Networks

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