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Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources

PLoS genetics, 2022-03, Vol.18 (3), p.e1009815-e1009815

2022

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Evolutionary Emergence of Drug Resistance in Candida Opportunistic Pathogens

Genes, 2018-09, Vol.9 (9), p.461

2018

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Acquisition of prokaryotic genes by fungal genomes

Trends in genetics, 2010-01, Vol.26 (1), p.5-8

2010

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Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

BMC genomics, 2012-11, Vol.13 (1), p.646-646, Article 646

2012

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Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

Genome Biology, 2020-11, Vol.21 (1), p.275-275, Article 275

2020

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PerSVade: personalized structural variant detection in any species of interest

Genome Biology, 2022-08, Vol.23 (1), p.1-175, Article 175

2022

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Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal

Current genetics, 2019-02, Vol.65 (1), p.93-98

2019

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Genomic history of the origin and domestication of common bean unveils its closest sister species

Genome Biology, 2017-03, Vol.18 (1), p.60-60, Article 60

2017

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Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis

Molecular biology and evolution, 2018-08, Vol.35 (8), p.1990-2004

2018

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Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans

Genetics (Austin), 2021-02, Vol.217 (2)

2021

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Large-scale assignment of orthology: back to phylogenetics?

Genome biology, 2008-01, Vol.9 (10), p.235-235

Gabaldón, Toni

2008

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Advances and Applications in the Quest for Orthologs

Molecular biology and evolution, 2019-10, Vol.36 (10), p.2157-2164

2019

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Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans

PLoS genetics, 2021-01, Vol.17 (1), p.e1008871-e1008871

2021

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Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha

Molecular biology and evolution, 2020-03, Vol.37 (3), p.730-756

2020

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Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin

Frontiers in genetics, 2019, Vol.10, p.383-383

2019

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Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

Genome Biology, 2016-02, Vol.17 (1), p.32, Article 32

2016

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Comparison between 16S rRNA and shotgun sequencing in colorectal cancer, advanced colorectal lesions, and healthy human gut microbiota

BMC genomics, 2024-07, Vol.25 (1), p.1-20, Article 730

2024

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Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla

Genomics (San Diego, Calif.), 2022-07, Vol.114 (4), p.110431-110431, Article 110431

2022

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Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

BMC genomics, 2016-01, Vol.17 (1), p.19, Article 19

2016

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Lack of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host

PLoS genetics, 2017-05, Vol.13 (5), p.e1006816-e1006816

2017

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Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)

PLoS genetics, 2014-08, Vol.10 (8), p.e1004496

2014

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Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum

Molecular biology and evolution, 2020-09, Vol.37 (9), p.2601-2615

2020

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Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources

Evolutionary Emergence of Drug Resistance in Candida Opportunistic Pathogens

Acquisition of prokaryotic genes by fungal genomes

Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

PerSVade: personalized structural variant detection in any species of interest

Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal

Genomic history of the origin and domestication of common bean unveils its closest sister species

Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis

Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans

Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

Large-scale assignment of orthology: back to phylogenetics?

Advances and Applications in the Quest for Orthologs

Comparative genomics of emerging pathogens in the Candida glabrata clade

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans

Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha

Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

Comparison between 16S rRNA and shotgun sequencing in colorectal cancer, advanced colorectal lesions, and healthy human gut microbiota

Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla

Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

Lack of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host

Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)

Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum

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