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ShapeSorter : a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

Nucleic acids research, 2022-08, Vol.50 (15), p.e85-e85

2022

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A comprehensive comparison of general RNA-RNA interaction prediction methods

Nucleic acids research, 2016-04, Vol.44 (7), p.e61-e61

2016

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R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

Nucleic acids research, 2020-10, Vol.48 (18), p.e105-e105

2020

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On the importance of cotranscriptional RNA structure formation

RNA (Cambridge), 2013-11, Vol.19 (11), p.1461-1473

2013

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The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Nature communications, 2019-12, Vol.10 (1), p.5518-15, Article 5518

2019

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Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

Nucleic acids research, 2008-12, Vol.36 (22), p.6977-6987

2008

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e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features

Nucleic acids research, 2023-07, Vol.51 (W1), p.W160-W167

2023

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SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework

PLoS computational biology, 2007-08, Vol.3 (8), p.e149-e149

2007

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CYCLeR-a novel tool for the full isoform assembly and quantification of circRNAs

Nucleic acids research, 2023-01, Vol.51 (2), p.e10-e10

2023

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In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression

Methods (San Diego, Calif.), 2017-05, Vol.120, p.3-16

Meyer, Irmtraud M.

2017

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TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures

PLoS computational biology, 2010-06, Vol.6 (6), p.e1000823-e1000823

2010

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The International Virus Bioinformatics Meeting 2020

Viruses, 2020-12, Vol.12 (12), p.1398

2020

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COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account

Nucleic acids research, 2013-05, Vol.41 (9), p.e102

2013

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CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

Nucleic acids research, 2021-02, Vol.49 (4), p.e19-e19

2021

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R-CHIE: a web server and R package for visualizing RNA secondary structures

Nucleic acids research, 2012-07, Vol.40 (12), p.e95-e95

2012

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A linear memory algorithm for Baum-Welch training

BMC bioinformatics, 2005-09, Vol.6 (1), p.231-231, Article 231

2005

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e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W373-W376

2014

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A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Development (Cambridge), 2019-03, Vol.146 (6)

2019

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Co-transcriptional folding is encoded within RNA genes

BMC molecular biology, 2004-08, Vol.5 (1), p.10-10

2004

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Predicting novel RNA–RNA interactions

Current opinion in structural biology, 2008-06, Vol.18 (3), p.387-393

Meyer, Irmtraud M

2008

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Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training

Algorithms for molecular biology, 2010-12, Vol.5 (1), p.38-38, Article 38

2010

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Genome-wide association between branch point properties and alternative splicing

PLoS computational biology, 2010-11, Vol.6 (11), p.e1001016-e1001016

2010

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Transient RNA structure features are evolutionarily conserved and can be computationally predicted

Nucleic acids research, 2013-07, Vol.41 (12), p.6273-6285

2013

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Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

Nucleic acids research, 2005-01, Vol.33 (19), p.6338-6348

2005

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ShapeSorter : a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

A comprehensive comparison of general RNA-RNA interaction prediction methods

R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

On the importance of cotranscriptional RNA structure formation

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features

SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework

CYCLeR-a novel tool for the full isoform assembly and quantification of circRNAs

In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures

Women in the European Virus Bioinformatics Center

The International Virus Bioinformatics Meeting 2020

COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

R-CHIE: a web server and R package for visualizing RNA secondary structures

A linear memory algorithm for Baum-Welch training

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Co-transcriptional folding is encoded within RNA genes

Predicting novel RNA–RNA interactions

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training

Genome-wide association between branch point properties and alternative splicing

Transient RNA structure features are evolutionarily conserved and can be computationally predicted

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

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