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Random-Effects Model Aimed at Discovering Associations in Meta-Analysis of Genome-wide Association Studies

American journal of human genetics, 2011-05, Vol.88 (5), p.586-598

2011

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Interpreting meta-analyses of genome-wide association studies

PLoS genetics, 2012-03, Vol.8 (3), p.e1002555-e1002555

2012

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Population structure in genetic studies: Confounding factors and mixed models

PLoS genetics, 2018-12, Vol.14 (12), p.e1007309-e1007309

2018

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Metalign: efficient alignment-based metagenomic profiling via containment min hash

Genome Biology, 2020-09, Vol.21 (1), p.1-242, Article 242

2020

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Leveraging pleiotropy for joint analysis of genome-wide association studies with per trait interpretations

PLoS genetics, 2022-11, Vol.18 (11), p.e1010447-e1010447

2022

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Colocalization of GWAS and eQTL Signals Detects Target Genes

American journal of human genetics, 2016-12, Vol.99 (6), p.1245-1260

2016

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Identifying causal variants by fine mapping across multiple studies

PLoS genetics, 2021-09, Vol.17 (9), p.e1009733-e1009733

2021

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Improving the usability and archival stability of bioinformatics software

Genome Biology, 2019-02, Vol.20 (1), p.47-47, Article 47

2019

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Integrating functional data to prioritize causal variants in statistical fine-mapping studies

PLoS genetics, 2014-10, Vol.10 (10), p.e1004722-e1004722

2014

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Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model

Genetics (Austin), 2015-05, Vol.200 (1), p.59-68

2015

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Improved methods for multi-trait fine mapping of pleiotropic risk loci

Bioinformatics (Oxford, England), 2017-01, Vol.33 (2), p.248-255

2017

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Rapid and accurate multiple testing correction and power estimation for millions of correlated markers

PLoS genetics, 2009-04, Vol.5 (4), p.e1000456-e1000456

2009

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Efficient Control of Population Structure in Model Organism Association Mapping

Genetics (Austin), 2008-03, Vol.178 (3), p.1709-1723

2008

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Hidden Treasures in Contemporary RNA Sequencing

1st ed. 2019., 2019

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Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

Cell metabolism, 2013-01, Vol.17 (1), p.141-152

2013

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BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference

Genome Biology, 2018-09, Vol.19 (1), p.141-141, Article 141

2018

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Optimal algorithms for haplotype assembly from whole-genome sequence data

Bioinformatics, 2010-06, Vol.26 (12), p.i183-i190

2010

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MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

BMC genomics, 2019-06, Vol.20 (Suppl 5), p.423-423, Article 423

2019

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Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches

PLoS genetics, 2013-06, Vol.9 (6), p.e1003491-e1003491

2013

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A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity

PloS one, 2020-09, Vol.15 (9), p.e0239474

2020

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The Hybrid Mouse Diversity Panel: a resource for systems genetics analyses of metabolic and cardiovascular traits

Journal of lipid research, 2016-06, Vol.57 (6), p.925-942

2016

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Challenges and recommendations to improve the installability and archival stability of omics computational tools

PLoS biology, 2019-06, Vol.17 (6), p.e3000333

2019

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Comparative analysis of proteome and transcriptome variation in mouse

PLoS genetics, 2011-06, Vol.7 (6), p.e1001393-e1001393

2011

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Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

Genetics (Austin), 2008-12, Vol.180 (4), p.1909-1925

2008

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Haplotype reconstruction from genotype data using Imperfect Phylogeny

Bioinformatics, 2004-08, Vol.20 (12), p.1842-1849

2004

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Random-Effects Model Aimed at Discovering Associations in Meta-Analysis of Genome-wide Association Studies

Interpreting meta-analyses of genome-wide association studies

Population structure in genetic studies: Confounding factors and mixed models

Metalign: efficient alignment-based metagenomic profiling via containment min hash

Leveraging pleiotropy for joint analysis of genome-wide association studies with per trait interpretations

Colocalization of GWAS and eQTL Signals Detects Target Genes

Identifying causal variants by fine mapping across multiple studies

Improving the usability and archival stability of bioinformatics software

Integrating functional data to prioritize causal variants in statistical fine-mapping studies

Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model

Improved methods for multi-trait fine mapping of pleiotropic risk loci

Rapid and accurate multiple testing correction and power estimation for millions of correlated markers

Efficient Control of Population Structure in Model Organism Association Mapping

Hidden Treasures in Contemporary RNA Sequencing

Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference

Optimal algorithms for haplotype assembly from whole-genome sequence data

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches

A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity

The Hybrid Mouse Diversity Panel: a resource for systems genetics analyses of metabolic and cardiovascular traits

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Comparative analysis of proteome and transcriptome variation in mouse

Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

Haplotype reconstruction from genotype data using Imperfect Phylogeny

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