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Adaptation in the age of ecological genomics: insights from parallelism and convergence

Trends in ecology & evolution (Amsterdam), 2011-06, Vol.26 (6), p.298-306

2011

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The Identification of the Closest Living Relative(s) of Tetrapods: Phylogenomic Lessons for Resolving Short Ancient Internodes

Systematic biology, 2016-11, Vol.65 (6), p.1057-1075

2016

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Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes

BMC evolutionary biology, 2010-10, Vol.10, p.326

2010

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The origin and biogeographic diversification of fishes in the family Poeciliidae

PloS one, 2017-03, Vol.12 (3), p.e0172546-e0172546

2017

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A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes

Molecular phylogenetics and evolution, 2007-06, Vol.43 (3), p.986-998

2007

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Minimal overall divergence of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes despite potential adaptive enrichment for scale-eating

PloS one, 2022-09, Vol.17 (9), p.e0273177-e0273177

2022

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Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes

BMC evolutionary biology, 2005-02, Vol.5, p.17

2005

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Rapid and Parallel Adaptive Evolution of the Visual System of Neotropical Midas Cichlid Fishes

Molecular biology and evolution, 2017-10, Vol.34 (10), p.2469-2485

2017

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Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case

BMC genomics, 2011-06, Vol.12 (1), p.325-325, Article 325

2011

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Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, and demonstrates that the sexually selected sword originated in the ancestral lineage of the genus, but was lost again secondarily

BMC evolutionary biology, 2013-01, Vol.13, p.25

2013

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Origin, spread and demography of the Mycobacterium tuberculosis complex

PLoS pathogens, 2008-09, Vol.4 (9), p.e1000160-e1000160

2008

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Evolution of Receptors for Growth Hormone and Somatolactin in Fish and Land Vertebrates: Lessons from the Lungfish and Sturgeon Orthologues

Journal of molecular evolution, 2007-10, Vol.65 (4), p.359-372

2007

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Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs

Journal of molecular evolution, 2006-06, Vol.62 (6), p.772-784

2006

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Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes

BMC biology, 2007-11, Vol.5 (1), p.51-51, Article 51

2007

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Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

BMC biology, 2010-05, Vol.8 (1), p.60-60, Article 60

2010

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Origin of the Superflock of Cichlid Fishes from Lake Victoria, East Africa

Science (American Association for the Advancement of Science), 2003-04, Vol.300 (5617), p.325-329

2003

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Implementing Large Genomic Single Nucleotide Polymorphism Data Sets in Phylogenetic Network Reconstructions: A Case Study of Particularly Rapid Radiations of Cichlid Fish

Systematic biology, 2020-09, Vol.69 (5), p.848

2020

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Molecular and morphological convergence to sulfide-tolerant fishes in a new species of Jenynsia (Cyprinodontiformes: Anablepidae), the first extremophile member of the family

PloS one, 2019-07, Vol.14 (7), p.e0218810

2019

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RECENT ADVANCES IN THE (MOLECULAR) PHYLOGENY OF VERTEBRATES

Annual review of ecology, evolution, and systematics, 2003-01, Vol.34 (1), p.311-338

2003

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The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes

Ecology and evolution, 2022-02, Vol.12 (2), p.e8568-n/a

2022

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Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes

PloS one, 2013-06, Vol.8 (6), p.e66400-e66400

2013

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Initial Diversification of Living Amphibians Predated the Breakup of Pangaea

The American naturalist, 2005-05, Vol.165 (5), p.590-599

2005

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Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae) driven by sexual selection

Molecular ecology, 2006-03, Vol.15 (3), p.721-730

2006

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Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups

Molecular phylogenetics and evolution, 2007-05, Vol.43 (2), p.567-582

2007

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Assessing Concordance of Fossil Calibration Points in Molecular Clock Studies: An Example Using Turtles

The American naturalist, 2005-02, Vol.165 (2), p.137-146

2005

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Adaptation in the age of ecological genomics: insights from parallelism and convergence

The Identification of the Closest Living Relative(s) of Tetrapods: Phylogenomic Lessons for Resolving Short Ancient Internodes

Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes

The origin and biogeographic diversification of fishes in the family Poeciliidae

A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes

Minimal overall divergence of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes despite potential adaptive enrichment for scale-eating

Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes

Rapid and Parallel Adaptive Evolution of the Visual System of Neotropical Midas Cichlid Fishes

Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case

Origin, spread and demography of the Mycobacterium tuberculosis complex

Evolution of Receptors for Growth Hormone and Somatolactin in Fish and Land Vertebrates: Lessons from the Lungfish and Sturgeon Orthologues

Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs

Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

Origin of the Superflock of Cichlid Fishes from Lake Victoria, East Africa

Implementing Large Genomic Single Nucleotide Polymorphism Data Sets in Phylogenetic Network Reconstructions: A Case Study of Particularly Rapid Radiations of Cichlid Fish

Molecular and morphological convergence to sulfide-tolerant fishes in a new species of Jenynsia (Cyprinodontiformes: Anablepidae), the first extremophile member of the family

RECENT ADVANCES IN THE (MOLECULAR) PHYLOGENY OF VERTEBRATES

The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes

Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes

Initial Diversification of Living Amphibians Predated the Breakup of Pangaea

Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae) driven by sexual selection

Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups

Assessing Concordance of Fossil Calibration Points in Molecular Clock Studies: An Example Using Turtles

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