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Network analyses reveal pervasive functional regulation between proteases in the human protease web

PLoS biology, 2014-05, Vol.12 (5), p.e1001869-e1001869

2014

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Detectability of Biotin Tags by LC–MS/MS

Journal of proteome research, 2021-05, Vol.20 (5), p.3002-3008

2021

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Fold-Change Compression: An Unexplored But Correctable Quantitative Bias Caused by Nonlinear Electrospray Ionization Responses in Untargeted Metabolomics

Analytical chemistry (Washington), 2020-05, Vol.92 (10), p.7011-7019

2020

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Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D290-D297

2015

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Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples

Molecular & cellular proteomics, 2019-11, Vol.18 (11), p.2335-2347

2019

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Annotating N Termini for the Human Proteome Project: N Termini and Nα-Acetylation Status Differentiate Stable Cleaved Protein Species from Degradation Remnants in the Human Erythrocyte Proteome

Journal of proteome research, 2014-04, Vol.13 (4), p.2028-2044

2014

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Randomized, Controlled Trial of Ultrasound-Assisted Catheter-Directed Thrombolysis for Acute Intermediate-Risk Pulmonary Embolism

Circulation (New York, N.Y.), 2014-01, Vol.129 (4), p.479-486

2014

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ASAPAutomated Sonication-Free Acid-Assisted Proteomesfrom Cells and FFPE Tissues

Analytical chemistry (Washington), 2023-02, Vol.95 (6), p.3291-3299

2023

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Sensitive Identification of Known and Unknown Protease Activities by Unsupervised Linear Motif Deconvolution

Analytical chemistry (Washington), 2022-02, Vol.94 (4), p.2244-2254

2022

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HUNTER: Sensitive Automated Characterization of Proteolytic Systems by N Termini Enrichment from Microscale Specimen

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2456, p.95

2022

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Isolation of Detergent Insoluble Proteins from Mouse Brain Tissue for Quantitative Analysis Using Data Independent Acquisition (DIA)

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2456, p.29

2022

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Protein TAILS: when termini tell tales of proteolysis and function

Current opinion in chemical biology, 2013-02, Vol.17 (1), p.73-82

2013

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Positional proteomics: is the technology ready to study clinical cohorts?

Expert review of proteomics, 2023-12, Vol.20 (12), p.309-318

2023

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Statistical Testing for Protein Equivalence Identifies Core Functional Modules Conserved across 360 Cancer Cell Lines and Presents a General Approach to Investigating Biological Systems

Journal of proteome research, 2024-05, Vol.23 (6), p.2169-2185

2024

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Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

Cell reports (Cambridge), 2014-10, Vol.9 (2), p.618-632

2014

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SQuAPP—simple quantitative analysis of proteins and PTMs

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4956-4958

2022

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Origins and clinical relevance of proteoforms in pediatric malignancies

Expert review of proteomics, 2019-03, Vol.16 (3), p.185-200

2019

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Modification of BRCA1-associated breast cancer risk by HMMR overexpression

Nature communications, 2022-04, Vol.13 (1), p.1895-16, Article 1895

2022

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LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

Nature methods, 2015-01, Vol.12 (1), p.55-58

2015

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TopFIND, a knowledgebase linking protein termini with function

Nature methods, 2011-09, Vol.8 (9), p.703-704

2011

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Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale

Scientific reports, 2021-11, Vol.11 (1), p.22490-22490, Article 22490

2021

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Valve-in-Valve Transcatheter Aortic Valve Implantation for Degenerated Bioprosthetic Heart Valves

JACC. Cardiovascular interventions, 2011-11, Vol.4 (11), p.1218-1227

2011

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ATF4 is an oxidative stress-inducible, prodeath transcription factor in neurons in vitro and in vivo

The Journal of experimental medicine, 2008-05, Vol.205 (5), p.1227-1242

2008

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Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation

Nature communications, 2022-04, Vol.13 (1), p.2200-17, Article 2200

2022

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Network analyses reveal pervasive functional regulation between proteases in the human protease web

Detectability of Biotin Tags by LC–MS/MS

Fold-Change Compression: An Unexplored But Correctable Quantitative Bias Caused by Nonlinear Electrospray Ionization Responses in Untargeted Metabolomics

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples

Annotating N Termini for the Human Proteome Project: N Termini and Nα-Acetylation Status Differentiate Stable Cleaved Protein Species from Degradation Remnants in the Human Erythrocyte Proteome

Randomized, Controlled Trial of Ultrasound-Assisted Catheter-Directed Thrombolysis for Acute Intermediate-Risk Pulmonary Embolism

ASAPAutomated Sonication-Free Acid-Assisted Proteomesfrom Cells and FFPE Tissues

Sensitive Identification of Known and Unknown Protease Activities by Unsupervised Linear Motif Deconvolution

HUNTER: Sensitive Automated Characterization of Proteolytic Systems by N Termini Enrichment from Microscale Specimen

Isolation of Detergent Insoluble Proteins from Mouse Brain Tissue for Quantitative Analysis Using Data Independent Acquisition (DIA)

Protein TAILS: when termini tell tales of proteolysis and function

Positional proteomics: is the technology ready to study clinical cohorts?

Statistical Testing for Protein Equivalence Identifies Core Functional Modules Conserved across 360 Cancer Cell Lines and Presents a General Approach to Investigating Biological Systems

Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

SQuAPP—simple quantitative analysis of proteins and PTMs

Origins and clinical relevance of proteoforms in pediatric malignancies

Modification of BRCA1-associated breast cancer risk by HMMR overexpression

LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

TopFIND, a knowledgebase linking protein termini with function

Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale

Valve-in-Valve Transcatheter Aortic Valve Implantation for Degenerated Bioprosthetic Heart Valves

ATF4 is an oxidative stress-inducible, prodeath transcription factor in neurons in vitro and in vivo

Active site specificity profiling of the matrix metalloproteinase family: Proteomic identification of 4300 cleavage sites by nine MMPs explored with structural and synthetic peptide cleavage analyses

Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation

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