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The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

Nature reviews. Molecular cell biology, 2017-04, Vol.18 (4), p.263

2017

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Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores

Molecular cell, 2020-03, Vol.77 (5), p.985-998.e8

2020

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Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

Cell, 2015-04, Vol.161 (3), p.541-554

2015

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Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms

Molecular cell, 2015-04, Vol.58 (2), p.339-352

2015

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Pause & go: from the discovery of RNA polymerase pausing to its functional implications

Current opinion in cell biology, 2017-06, Vol.46, p.72-80

2017

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A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

Cell, 2014-06, Vol.157 (7), p.1712-1723

2014

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The Ground State and Evolution of Promoter Region Directionality

Cell, 2017-08, Vol.170 (5), p.889-898.e10

2017

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Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness

eLife, 2019-03, Vol.8

2019

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Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue

Cell reports (Cambridge), 2016-06, Vol.15 (10), p.2147-2158

2016

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Spt6 Is Required for the Fidelity of Promoter Selection

Molecular cell, 2018-11, Vol.72 (4), p.687-699.e6

2018

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Revealing nascent RNA processing dynamics with nano-COP

Nature protocols, 2021-03, Vol.16 (3), p.1343-1375

2021

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Subgenic Pol II interactomes identify region‐specific transcription elongation regulators

Molecular systems biology, 2017-01, Vol.13 (1), p.900-n/a

2017

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Transcription elongation is finely tuned by dozens of regulatory factors

eLife, 2022-05, Vol.11

2022

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Post-transcriptional splicing can occur in a slow-moving zone around the gene

eLife, 2024-04, Vol.12

2024

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H3K4 Trimethylation by Set1 Promotes Efficient Termination by the Nrd1-Nab3-Sen1 Pathway

Molecular and Cellular Biology, 2011-09, Vol.31 (17), p.3569-3583

2011

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Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing

Nature protocols, 2016-04, Vol.11 (4), p.813-833

2016

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Mitochondrial Ribosome (Mitoribosome) Profiling for Monitoring Mitochondrial Translation In Vivo

Current protocols in molecular biology (Print), 2017-07, Vol.119 (1), p.4.28.1-4.28.25

2017

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A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

Cell, 2014-07, Vol.158 (2), p.462-462

2014

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Human Mitoribosome Profiling: A Re-engineered Approach Tailored to Study Mitochondrial Translation

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2661, p.257

2023

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Not Just Noise: Genomics and Genetics Bring Long Noncoding RNAs into Focus

Molecular cell, 2017-01, Vol.65 (1), p.1-2

Churchman, L. Stirling

2017

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A Non-Gaussian Distribution Quantifies Distances Measured with Fluorescence Localization Techniques

Biophysical journal, 2006-01, Vol.90 (2), p.668-671

2006

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Myosin VI walks hand-over-hand along actin

Nature structural & molecular biology, 2004-09, Vol.11 (9), p.884-887

2004

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Timing is everything: advances in quantifying splicing kinetics

Trends in cell biology, 2024-05

2024

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Colocalization of fluorescent probes: accurate and precise registration with nanometer resolution

Cold Spring Harbor protocols, 2012-02, Vol.2012 (2), p.141

2012

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The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms

Pause & go: from the discovery of RNA polymerase pausing to its functional implications

A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

The Ground State and Evolution of Promoter Region Directionality

Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness

BET Bromodomain Proteins Function as Master Transcription Elongation Factors Independent of CDK9 Recruitment

Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue

Spt6 Is Required for the Fidelity of Promoter Selection

Revealing nascent RNA processing dynamics with nano-COP

Subgenic Pol II interactomes identify region‐specific transcription elongation regulators

Transcription elongation is finely tuned by dozens of regulatory factors

Post-transcriptional splicing can occur in a slow-moving zone around the gene

H3K4 Trimethylation by Set1 Promotes Efficient Termination by the Nrd1-Nab3-Sen1 Pathway

Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing

Mitochondrial Ribosome (Mitoribosome) Profiling for Monitoring Mitochondrial Translation In Vivo

A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

Human Mitoribosome Profiling: A Re-engineered Approach Tailored to Study Mitochondrial Translation

Not Just Noise: Genomics and Genetics Bring Long Noncoding RNAs into Focus

A Non-Gaussian Distribution Quantifies Distances Measured with Fluorescence Localization Techniques

Myosin VI walks hand-over-hand along actin

Timing is everything: advances in quantifying splicing kinetics

Colocalization of fluorescent probes: accurate and precise registration with nanometer resolution

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