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Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Systematic biology, 2022-02, Vol.71 (2), p.353-366

2022

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Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Systematic biology, 2018-07, Vol.67 (4), p.576-593

2018

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Distinguishing Cophylogenetic Signal from Phylogenetic Congruence Clarifies the Interplay Between Evolutionary History and Species Interactions

Systematic biology, 2024-09, Vol.73 (3), p.613-622

2024

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Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference

Systematic biology, 2016-07, Vol.65 (4), p.700-710

2016

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An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Ecology letters, 2020-11, Vol.23 (11), p.1623-1634

2020

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Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs

Systematic biology, 2016-01, Vol.65 (1), p.146-160

2016

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The build-up of the present-day tropical diversity of tetrapods

Proceedings of the National Academy of Sciences - PNAS, 2023-05, Vol.120 (20), p.e2220672120-e2220672120

2023

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Model-Based Inference of Punctuated Molecular Evolution

Molecular biology and evolution, 2020-11, Vol.37 (11), p.3308-3323

2020

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Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Molecular ecology, 2023-12, Vol.32 (23), p.6671-6685

2023

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Detecting the ecological footprint of selection

PloS one, 2024-06, Vol.19 (6), p.e0302794

2024

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RPANDA: an R package for macroevolutionary analyses on phylogenetic trees

Methods in ecology and evolution, 2016-05, Vol.7 (5), p.589-597

2016

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Picante: R tools for integrating phylogenies and ecology

Bioinformatics, 2010-06, Vol.26 (11), p.1463-1464

2010

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Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes

Ecology letters, 2015-05, Vol.18 (5), p.441-450

2015

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Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Systematic biology, 2020-03, Vol.69 (2), p.234-248

2020

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Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

Molecular biology and evolution, 2023-07, Vol.40 (7)

2023

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A broadscale analysis of host‐symbiont cophylogeny reveals the drivers of phylogenetic congruence

Ecology letters, 2021-08, Vol.24 (8), p.1681-1696

2021

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Abiotic stress tolerance and competition‐related traits underlie phylogenetic clustering in soil bacterial communities

Ecology letters, 2014-10, Vol.17 (10), p.1191-1201

2014

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Climate-driven extinctions shape the phylogenetic structure of temperate tree floras

Ecology letters, 2015-03, Vol.18 (3), p.263-272

2015

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Characterizing symbiont inheritance during host–microbiota evolution: Application to the great apes gut microbiota

Molecular ecology resources, 2019-11, Vol.19 (6), p.1659-1671

2019

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Response to technical comment ‘A cautionary note for users of linear diversification dependencies’

Ecology letters, 2020-07, Vol.23 (7), p.1172-1174

2020

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Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation

Molecular ecology resources, 2022-04, Vol.22 (3), p.847-861

2022

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Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Systematic biology, 2020-09, Vol.69 (5), p.927-943

2020

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Inferring the ecological and evolutionary determinants of community genetic diversity

Molecular ecology, 2023-12, Vol.32 (23), p.6093-6109

2023

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Accelerated body size evolution during cold climatic periods in the Cenozoic

Proceedings of the National Academy of Sciences - PNAS, 2017-04, Vol.114 (16), p.4183-4188

2017

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A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution

Systematic biology, 2019-01, Vol.68 (1), p.93-116

2019

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Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Distinguishing Cophylogenetic Signal from Phylogenetic Congruence Clarifies the Interplay Between Evolutionary History and Species Interactions

Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference

An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs

The build-up of the present-day tropical diversity of tetrapods

Model-Based Inference of Punctuated Molecular Evolution

Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Detecting the ecological footprint of selection

RPANDA: an R package for macroevolutionary analyses on phylogenetic trees

Picante: R tools for integrating phylogenies and ecology

Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes

Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

A broadscale analysis of host‐symbiont cophylogeny reveals the drivers of phylogenetic congruence

Abiotic stress tolerance and competition‐related traits underlie phylogenetic clustering in soil bacterial communities

Climate-driven extinctions shape the phylogenetic structure of temperate tree floras

Characterizing symbiont inheritance during host–microbiota evolution: Application to the great apes gut microbiota

Response to technical comment ‘A cautionary note for users of linear diversification dependencies’

Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation

Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Inferring the ecological and evolutionary determinants of community genetic diversity

Accelerated body size evolution during cold climatic periods in the Cenozoic

A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution

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