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MyDas, an extensible Java DAS server

PloS one, 2012-09, Vol.7 (9), p.e44180-e44180

2012

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BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

PloS one, 2018-10, Vol.13 (10), p.e0205286-e0205286

2018

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Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

PeerJ (San Francisco, CA), 2020-12, Vol.8, p.e10575-e10575, Article e10575

2020

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TreeVector: scalable, interactive, phylogenetic trees for the web

PloS one, 2010-01, Vol.5 (1), p.e8934-e8934

2010

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Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

PloS one, 2020-05, Vol.15 (5), p.e0233438-e0233438

2020

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Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

PloS one, 2020-09, Vol.15 (9), p.e0239694-e0239694

2020

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CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

PloS one, 2017-01, Vol.12 (1), p.e0170482-e0170482

2017

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iPiG: integrating peptide spectrum matches into genome browser visualizations

PloS one, 2012-12, Vol.7 (12), p.e50246-e50246

2012

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Efficient sample tracking with OpenLabFramework

Scientific reports, 2014-03, Vol.4 (1), p.4278-4278, Article 4278

2014

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NMRDSP: an accurate prediction of protein shape strings from NMR chemical shifts and sequence data

PloS one, 2013-12, Vol.8 (12), p.e83532-e83532

2013

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CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

PloS one, 2012-08, Vol.7 (8), p.e43287-e43287

2012

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Droplet digital PCR versus real-time PCR for in-house validation of porcine detection and quantification protocol: An artificial recombinant plasmid approach

PloS one, 2023-07, Vol.18 (7), p.e0287712-e0287712

2023

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BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

PloS one, 2012-11, Vol.7 (11), p.e49239-e49239

2012

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Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery

PloS one, 2023-10, Vol.18 (10), p.e0292156-e0292156

2023

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LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

PloS one, 2013-05, Vol.8 (5), p.e61951-e61951

2013

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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

PloS one, 2011-09, Vol.6 (9), p.e22594-e22594

2011

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Comparison of WTC dust size on macrophage inflammatory cytokine release in vivo and in vitro

PloS one, 2012-07, Vol.7 (7), p.e40016

2012

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NeisseriaBase: a specialised Neisseria genomic resource and analysis platform

PeerJ (San Francisco, CA), 2016-03, Vol.4, p.e1698-e1698, Article e1698

2016

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Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

PloS one, 2013-03, Vol.8 (3), p.e58759-e58759

2013

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De novo transcriptome assembly data for sengon (Falcataria moluccana) trees displaying resistance and susceptibility to boktor stem borers (Xystrocera festiva Pascoe)

BMC research notes, 2021-07, Vol.14 (1), p.261-261, Article 261

2021

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SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment

PeerJ (San Francisco, CA), 2017-06, Vol.5, p.e3492-e3492, Article e3492

2017

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Effect of orange almond potato cookies supplementation on the nutritional status of underweight preschool-aged children during COVID-19 pandemic

PloS one, 2022-04, Vol.17 (4), p.e0266023

2022

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A novel approach for transcription factor analysis using SELEX with high-throughput sequencing (TFAST)

PloS one, 2012-08, Vol.7 (8), p.e42761-e42761

2012

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A knowledge-based weighting framework to boost the power of genome-wide association studies

PloS one, 2010-12, Vol.5 (12), p.e14480-e14480

2010

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GPS-CCD: a novel computational program for the prediction of calpain cleavage sites

PloS one, 2011-04, Vol.6 (4), p.e19001-e19001

2011

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MyDas, an extensible Java DAS server

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

TreeVector: scalable, interactive, phylogenetic trees for the web

Unique insights from ClinicalTrials.gov by mining protein mutations and RSids in addition to applying the Human Phenotype Ontology

Analysis of COVID-19 clinical trials: A data-driven, ontology-based, and natural language processing approach

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

iPiG: integrating peptide spectrum matches into genome browser visualizations

Efficient sample tracking with OpenLabFramework

NMRDSP: an accurate prediction of protein shape strings from NMR chemical shifts and sequence data

CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

Droplet digital PCR versus real-time PCR for in-house validation of porcine detection and quantification protocol: An artificial recombinant plasmid approach

BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery

LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

Comparison of WTC dust size on macrophage inflammatory cytokine release in vivo and in vitro

NeisseriaBase: a specialised Neisseria genomic resource and analysis platform

Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

De novo transcriptome assembly data for sengon (Falcataria moluccana) trees displaying resistance and susceptibility to boktor stem borers (Xystrocera festiva Pascoe)

SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment

Effect of orange almond potato cookies supplementation on the nutritional status of underweight preschool-aged children during COVID-19 pandemic

A novel approach for transcription factor analysis using SELEX with high-throughput sequencing (TFAST)

A knowledge-based weighting framework to boost the power of genome-wide association studies

GPS-CCD: a novel computational program for the prediction of calpain cleavage sites

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