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The DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis

Genes, 2020-03, Vol.11 (3), p.289

2020

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Genoviz Software Development Kit: Java tool kit for building genomics visualization applications

BMC bioinformatics, 2009-08, Vol.10 (1), p.266-266, Article 266

2009

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Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format

Source code for biology and medicine, 2011-03, Vol.6 (1), p.5-5, Article 5

2011

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Analysis of viral protein-2 encoding gene of avian encephalomyelitis virus from field specimens in Central Java region, Indonesia

Veterinary World, 2016-01, Vol.9 (1), p.25-31

2016

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

BMC systems biology, 2013-08, Vol.7 (1), p.74-74, Article 74

2013

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Sangerbox: A comprehensive, interaction‐friendly clinical bioinformatics analysis platform

iMeta, 2022-09, Vol.1 (3), p.e36-n/a

2022

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JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene‐variant discovery, annotation, prediction, and genotyping

FEBS open bio, 2021-09, Vol.11 (9), p.2441-2452

2021

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EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

BMC bioinformatics, 2014, Vol.15 Suppl 15 (Suppl 15), p.S7-S7, Article S7

2014

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HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

BMC bioinformatics, 2022-01, Vol.23 (1), p.23-23, Article 23

2022

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Construction, visualisation, and clustering of transcription networks from microarray expression data

PLoS computational biology, 2007-10, Vol.3 (10), p.2032-2042

2007

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Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

BMC bioinformatics, 2017-03, Vol.18 (1), p.149-149, Article 149

2017

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Metabopolis: scalable network layout for biological pathway diagrams in urban map style

BMC bioinformatics, 2019-04, Vol.20 (1), p.187-187, Article 187

2019

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DendroX: multi-level multi-cluster selection in dendrograms

BMC genomics, 2024-02, Vol.25 (1), p.134-134, Article 134

2024

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Trackplot: A flexible toolkit for combinatorial analysis of genomic data

PLoS computational biology, 2023-09, Vol.19 (9), p.e1011477

2023

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Comparison of Transcriptomic Signatures between Monkeypox-Infected Monkey and Human Cell Lines

Journal of Immunology Research, 2022-09, Vol.2022, p.3883822-17

2022

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A robust and stable gene selection algorithm based on graph theory and machine learning

Human genomics, 2021-11, Vol.15 (1), p.66-66, Article 66

2021

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MBAT: a scalable informatics system for unifying digital atlasing workflows

BMC bioinformatics, 2010-12, Vol.11 (1), p.608-608, Article 608

2010

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Applications of Neural Networks in Biomedical Data Analysis

Biomedicines, 2022-06, Vol.10 (7), p.1469

2022

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BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies

BMC bioinformatics, 2014-07, Vol.15 (1), p.251-251, Article 251

2014

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C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

BMC bioinformatics, 2017-09, Vol.18 (Suppl 10), p.392-392, Article 392

2017

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FMAj: a tool for high content analysis of muscle dynamics in Drosophila metamorphosis

BMC bioinformatics, 2014, Vol.15 Suppl 16 (Suppl 16), p.S6-S6, Article S6

2014

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A graph-based approach for designing extensible pipelines

BMC bioinformatics, 2012-07, Vol.13 (1), p.163-163, Article 163

2012

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TimeXNet: identifying active gene sub-networks using time-course gene expression profiles

BMC systems biology, 2014, Vol.8 Suppl 4 (Suppl 4), p.S2-S2

2014

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Identification of DNA Methyltransferase-1 Inhibitor for Breast Cancer Therapy through Computational Fragment-Based Drug Design

Molecules (Basel, Switzerland), 2021-01, Vol.26 (2), p.375

2021

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Mayday--integrative analytics for expression data

BMC bioinformatics, 2010-03, Vol.11 (1), p.121-121, Article 121

2010

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The DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis

Genoviz Software Development Kit: Java tool kit for building genomics visualization applications

Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format

Analysis of viral protein-2 encoding gene of avian encephalomyelitis virus from field specimens in Central Java region, Indonesia

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Sangerbox: A comprehensive, interaction‐friendly clinical bioinformatics analysis platform

JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene‐variant discovery, annotation, prediction, and genotyping

EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

Construction, visualisation, and clustering of transcription networks from microarray expression data

Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

Metabopolis: scalable network layout for biological pathway diagrams in urban map style

DendroX: multi-level multi-cluster selection in dendrograms

Trackplot: A flexible toolkit for combinatorial analysis of genomic data

Comparison of Transcriptomic Signatures between Monkeypox-Infected Monkey and Human Cell Lines

A robust and stable gene selection algorithm based on graph theory and machine learning

MBAT: a scalable informatics system for unifying digital atlasing workflows

Applications of Neural Networks in Biomedical Data Analysis

BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

FMAj: a tool for high content analysis of muscle dynamics in Drosophila metamorphosis

A graph-based approach for designing extensible pipelines

TimeXNet: identifying active gene sub-networks using time-course gene expression profiles

Identification of DNA Methyltransferase-1 Inhibitor for Breast Cancer Therapy through Computational Fragment-Based Drug Design

Mayday--integrative analytics for expression data

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