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Disentangling juxtacrine from paracrine signalling in dynamic tissue

PLoS computational biology, 2019-06, Vol.15 (6), p.e1007030-e1007030

2019

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Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008228-e1008228

2020

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The role of cell geometry and cell-cell communication in gradient sensing

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009552

2022

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Improving the workflow to crack Small, Unbalanced, Noisy, but Genuine (SUNG) datasets in bioacoustics: The case of bonobo calls

PLoS computational biology, 2023-04, Vol.19 (4), p.e1010325-e1010325

2023

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Inferring a spatial code of cell-cell interactions across a whole animal body

PLoS computational biology, 2022-11, Vol.18 (11), p.e1010715-e1010715

2022

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Learning the rules of collective cell migration using deep attention networks

PLoS computational biology, 2022-04, Vol.18 (4), p.e1009293-e1009293

2022

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Good enough practices in scientific computing

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005510-e1005510

2017

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Teaching students to R3eason, not merely to solve problem sets: The role of philosophy and visual data communication in accessible data science education

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011160

2023

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Large eddy simulation of droplet transport and deposition in the human respiratory tract to evaluate inhalation risk

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010972-e1010972

2023

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Real-Time Control of an Articulatory-Based Speech Synthesizer for Brain Computer Interfaces

PLoS computational biology, 2016-11, Vol.12 (11), p.e1005119-e1005119

2016

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PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

PLoS computational biology, 2018-02, Vol.14 (2), p.e1005991-e1005991

2018

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Active Vertex Model for cell-resolution description of epithelial tissue mechanics

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005569-e1005569

2017

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Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size

PLoS computational biology, 2017-04, Vol.13 (4), p.e1005507-e1005507

2017

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Ten simple rules for short and swift presentations

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005373-e1005373

Lortie, Christopher J

2017

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Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

PLoS computational biology, 2014-08, Vol.10 (8), p.e1003774-e1003774

2014

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Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication

PLoS computational biology, 2016-03, Vol.12 (3), p.e1004678-e1004678

2016

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Spontaneous cortical activity is transiently poised close to criticality

PLoS computational biology, 2017-05, Vol.13 (5), p.e1005543-e1005543

2017

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From energy to cellular forces in the Cellular Potts Model: An algorithmic approach

PLoS computational biology, 2019-12, Vol.15 (12), p.e1007459-e1007459

2019

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Derivation and simulation of a computational model of active cell populations: How overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces affect alignment

PLoS computational biology, 2024-07, Vol.20 (7), p.e1011879

2024

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Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication

PLoS computational biology, 2017-01, Vol.13 (1), p.e1005299

2017

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Macroscopic phase resetting-curves determine oscillatory coherence and signal transfer in inter-coupled neural circuits

PLoS computational biology, 2019-05, Vol.15 (5), p.e1007019-e1007019

2019

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A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005758-e1005758

2017

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Detection and analysis of spatiotemporal patterns in brain activity

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006643-e1006643

2018

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Deep image reconstruction from human brain activity

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006633-e1006633

2019

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Dynamics of Cell Ensembles on Adhesive Micropatterns: Bridging the Gap between Single Cell Spreading and Collective Cell Migration

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004863-e1004863

2016

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Disentangling juxtacrine from paracrine signalling in dynamic tissue

Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires

The role of cell geometry and cell-cell communication in gradient sensing

Improving the workflow to crack Small, Unbalanced, Noisy, but Genuine (SUNG) datasets in bioacoustics: The case of bonobo calls

Inferring a spatial code of cell-cell interactions across a whole animal body

Learning the rules of collective cell migration using deep attention networks

Good enough practices in scientific computing

Teaching students to R3eason, not merely to solve problem sets: The role of philosophy and visual data communication in accessible data science education

Large eddy simulation of droplet transport and deposition in the human respiratory tract to evaluate inhalation risk

Real-Time Control of an Articulatory-Based Speech Synthesizer for Brain Computer Interfaces

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

Active Vertex Model for cell-resolution description of epithelial tissue mechanics

Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size

Ten simple rules for short and swift presentations

Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication

Spontaneous cortical activity is transiently poised close to criticality

From energy to cellular forces in the Cellular Potts Model: An algorithmic approach

Derivation and simulation of a computational model of active cell populations: How overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces affect alignment

Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication

Macroscopic phase resetting-curves determine oscillatory coherence and signal transfer in inter-coupled neural circuits

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect

Detection and analysis of spatiotemporal patterns in brain activity

Deep image reconstruction from human brain activity

Dynamics of Cell Ensembles on Adhesive Micropatterns: Bridging the Gap between Single Cell Spreading and Collective Cell Migration

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