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Hypoxia Induces Transcriptional and Translational Downregulation of the Type I IFN Pathway in Multiple Cancer Cell Types

Cancer research (Chicago, Ill.), 2020-12, Vol.80 (23), p.5245-5256

2020

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Natural and Experimental Rewiring of Gene Regulatory Regions

Annual review of genomics and human genetics, 2022-08, Vol.23 (1), p.73-97

2022

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Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis

Molecular cell, 2020-06, Vol.78 (5), p.960-974.e11

2020

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Comparing the two leading erythroid lines BEL-A and HUDEP-2

Haematologica (Roma), 2020-08, Vol.105 (8), p.e389-e394

2020

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LanceOtron: a deep learning peak caller for genome sequencing experiments

Bioinformatics, 2022-09, Vol.38 (18), p.4255-4263

2022

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Erratum to: Comparing the two leading erythroid lines BEL-A and HUDEP-2

Haematologica (Roma), 2024-01, Vol.109 (1), p.364

2024

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Enhancers predominantly regulate gene expression during differentiation via transcription initiation

Molecular cell, 2021-03, Vol.81 (5), p.983-997.e7

2021

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Impaired DNA demethylation of C/EBP sites causes premature aging

Genes & development, 2018-06, Vol.32 (11-12), p.742-762

2018

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Duplication and Functional Divergence of Branched-Chain Amino Acid Biosynthesis Genes in Aspergillus nidulans

mBio, 2021-06, Vol.12 (3), p.e0076821-e0076821

2021

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Recapitulation of erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities

Haematologica (Roma), 2021-11, Vol.106 (11), p.2960-2970

2021

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Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C

Nucleic acids research, 2017-12, Vol.45 (22), p.e184-e184

2017

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A remarkable case of HbH disease illustrates the relative contributions of the α-globin enhancers to gene expression

Blood, 2021-01, Vol.137 (4), p.572-575

2021

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Functional characterisation of cis -regulatory elements governing dynamic Eomes expression in the early mouse embryo

Development (Cambridge), 2017-04, Vol.144 (7), p.1249-1260

2017

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Genetic and functional insights into CDA-I prevalence and pathogenesis

Journal of medical genetics, 2021-03, Vol.58 (3), p.185-195

2021

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Inferring causal genes at type 2 diabetes GWAS loci through chromosome interactions in islet cells

Wellcome open research, 2023, Vol.8, p.165-165

2023

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Assessment of Multiway Interactions with Tri-C

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2532, p.95

2022

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Low-input Capture-C: A Chromosome Conformation Capture Assay to Analyze Chromatin Architecture in Small Numbers of Cells

Bio-protocol, 2017-12, Vol.7 (23)

2017

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Regulation of the NADP-glutamate dehydrogenase gene gdhA in Aspergillus nidulans by the Zn(II)2Cys6 transcription factor LeuB

Microbiology (Society for General Microbiology), 2013-12, Vol.159 (Pt 12), p.2467-2480

2013

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Characterization of the mutagenic spectrum of 4-nitroquinoline 1-oxide (4-NQO) in Aspergillus nidulans by whole genome sequencing

G3 : genes - genomes - genetics, 2014-12, Vol.4 (12), p.2483-2492

2014

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Multiple nuclear localization signals mediate nuclear localization of the GATA transcription factor AreA

Eukaryotic cell, 2014-04, Vol.13 (4), p.527-538

2014

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Dual DNA binding and coactivator functions of Aspergillus nidulans TamA, a Zn(II)2Cys6 transcription factor

Molecular microbiology, 2014-06, Vol.92 (6), p.1198-1211

2014

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High-Throughput Genotyping of CRISPR/Cas Edited Cells in 96-Well Plates

Methods and protocols, 2018-08, Vol.1 (3), p.29

2018

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A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Cell, 2022-03, Vol.185 (5), p.916-938.e58

2022

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Expression of the Human Alpha-Globin Cluster in the Absence of the Major Regulatory Element Mcs-R2

Blood, 2018-11, Vol.132 (Supplement 1), p.3632-3632

2018

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Hypoxia induces transcriptional and translational downregulation of the type I interferon (IFN) pathway in multiple cancer cell types

Cancer research (Chicago, Ill.), 2020-10, Vol.80 (23), p.5245-5256

2020

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Hypoxia Induces Transcriptional and Translational Downregulation of the Type I IFN Pathway in Multiple Cancer Cell Types

Natural and Experimental Rewiring of Gene Regulatory Regions

Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis

Comparing the two leading erythroid lines BEL-A and HUDEP-2

LanceOtron: a deep learning peak caller for genome sequencing experiments

Erratum to: Comparing the two leading erythroid lines BEL-A and HUDEP-2

Enhancers predominantly regulate gene expression during differentiation via transcription initiation

Impaired DNA demethylation of C/EBP sites causes premature aging

Duplication and Functional Divergence of Branched-Chain Amino Acid Biosynthesis Genes in Aspergillus nidulans

Recapitulation of erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities

Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C

A remarkable case of HbH disease illustrates the relative contributions of the α-globin enhancers to gene expression

Functional characterisation of cis -regulatory elements governing dynamic Eomes expression in the early mouse embryo

Genetic and functional insights into CDA-I prevalence and pathogenesis

Inferring causal genes at type 2 diabetes GWAS loci through chromosome interactions in islet cells

Assessment of Multiway Interactions with Tri-C

Low-input Capture-C: A Chromosome Conformation Capture Assay to Analyze Chromatin Architecture in Small Numbers of Cells

Regulation of the NADP-glutamate dehydrogenase gene gdhA in Aspergillus nidulans by the Zn(II)2Cys6 transcription factor LeuB

Characterization of the mutagenic spectrum of 4-nitroquinoline 1-oxide (4-NQO) in Aspergillus nidulans by whole genome sequencing

Multiple nuclear localization signals mediate nuclear localization of the GATA transcription factor AreA

Dual DNA binding and coactivator functions of Aspergillus nidulans TamA, a Zn(II)2Cys6 transcription factor

High-Throughput Genotyping of CRISPR/Cas Edited Cells in 96-Well Plates

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Expression of the Human Alpha-Globin Cluster in the Absence of the Major Regulatory Element Mcs-R2

Hypoxia induces transcriptional and translational downregulation of the type I interferon (IFN) pathway in multiple cancer cell types

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