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Why does diversification slow down?

Trends in ecology & evolution (Amsterdam), 2014-04, Vol.29 (4), p.190-197

2014

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Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Systematic biology, 2022-02, Vol.71 (2), p.353-366

2022

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Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues

Trends in ecology & evolution (Amsterdam), 2022-06, Vol.37 (6), p.497-506

2022

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Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification

Ecology letters, 2019-12, Vol.22 (12), p.2006-2017

2019

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Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Systematic biology, 2018-07, Vol.67 (4), p.576-593

2018

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Deep Learning from Phylogenies for Diversification Analyses

Systematic biology, 2023-12, Vol.72 (6), p.1262-1279

2023

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Distinguishing Cophylogenetic Signal from Phylogenetic Congruence Clarifies the Interplay Between Evolutionary History and Species Interactions

Systematic biology, 2024-09, Vol.73 (3), p.613-622

2024

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Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference

Systematic biology, 2016-07, Vol.65 (4), p.700-710

2016

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The ClaDS rate-heterogeneous birth-death prior for full phylogenetic inference in BEAST2

Systematic biology, 2023-11, Vol.72 (5), p.1180-1187

2023

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An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Ecology letters, 2020-11, Vol.23 (11), p.1623-1634

2020

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Macroevolutionary perspectives to environmental change

Ecology letters, 2013-05, Vol.16 (s1), p.72-85

2013

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Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs

Systematic biology, 2016-01, Vol.65 (1), p.146-160

2016

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Model-Based Inference of Punctuated Molecular Evolution

Molecular biology and evolution, 2020-11, Vol.37 (11), p.3308-3323

2020

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Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Molecular ecology, 2023-12, Vol.32 (23), p.6671-6685

2023

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Detecting the ecological footprint of selection

PloS one, 2024-06, Vol.19 (6), p.e0302794

2024

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RPANDA: an R package for macroevolutionary analyses on phylogenetic trees

Methods in ecology and evolution, 2016-05, Vol.7 (5), p.589-597

2016

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Picante: R tools for integrating phylogenies and ecology

Bioinformatics, 2010-06, Vol.26 (11), p.1463-1464

2010

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Phylogenetic approaches for studying diversification

Ecology letters, 2014-04, Vol.17 (4), p.508-525

2014

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Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes

Ecology letters, 2015-05, Vol.18 (5), p.441-450

2015

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Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Systematic biology, 2020-03, Vol.69 (2), p.234-248

2020

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Understanding how biodiversity unfolds through time under neutral theory

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2016-04, Vol.371 (1691), p.20150226

2016

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Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

Molecular biology and evolution, 2023-07, Vol.40 (7)

2023

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Phylogenies support out-of-equilibrium models of biodiversity

Ecology letters, 2015-04, Vol.18 (4), p.347-356

2015

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A broadscale analysis of host‐symbiont cophylogeny reveals the drivers of phylogenetic congruence

Ecology letters, 2021-08, Vol.24 (8), p.1681-1696

2021

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Abiotic stress tolerance and competition‐related traits underlie phylogenetic clustering in soil bacterial communities

Ecology letters, 2014-10, Vol.17 (10), p.1191-1201

2014

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Why does diversification slow down?

Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues

Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification

Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Deep Learning from Phylogenies for Diversification Analyses

Distinguishing Cophylogenetic Signal from Phylogenetic Congruence Clarifies the Interplay Between Evolutionary History and Species Interactions

Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference

The ClaDS rate-heterogeneous birth-death prior for full phylogenetic inference in BEAST2

An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Macroevolutionary perspectives to environmental change

Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs

Model-Based Inference of Punctuated Molecular Evolution

Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Detecting the ecological footprint of selection

RPANDA: an R package for macroevolutionary analyses on phylogenetic trees

Picante: R tools for integrating phylogenies and ecology

Phylogenetic approaches for studying diversification

Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes

Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Understanding how biodiversity unfolds through time under neutral theory

Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

Phylogenies support out-of-equilibrium models of biodiversity

A broadscale analysis of host‐symbiont cophylogeny reveals the drivers of phylogenetic congruence

Abiotic stress tolerance and competition‐related traits underlie phylogenetic clustering in soil bacterial communities

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