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AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs

Bioinformatics, 2018-10, Vol.34 (19), p.3408-3411

2018

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Novel combination of CRISPR-based gene drives eliminates resistance and localises spread

Scientific reports, 2021-03, Vol.11 (1), p.3719-3719, Article 3719

2021

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Genomic Selection for Any Dairy Breeding Program via Optimized Investment in Phenotyping and Genotyping

Frontiers in genetics, 2021-02, Vol.12, p.637017-637017

2021

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Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation

Crop science, 2014-07, Vol.54 (4), p.1476-1488

2014

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AlphaSimR: an R package for breeding program simulations

G3 : genes - genomes - genetics, 2021-02, Vol.11 (2)

2021

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Genomic prediction with whole-genome sequence data in intensely selected pig lines

Genetics selection evolution (Paris), 2022-09, Vol.54 (1), p.1-65, Article 65

2022

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How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding

Frontiers in plant science, 2020-12, Vol.11, p.592977-592977

2020

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Assessment of long-term trends in genetic mean and variance after the introduction of genomic selection in layers: a simulation study

Frontiers in genetics, 2023-05, Vol.14, p.1168212

2023

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Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction

PloS one, 2021-05, Vol.16 (5), p.e0235554-e0235554

2021

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Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds

Genetics selection evolution (Paris), 2021-09, Vol.53 (1), p.1-76, Article 76

2021

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A gene drive does not spread easily in populations of the honey bee parasite Varroa destructor

Apidologie, 2021, Vol.52 (6), p.1112-1127

2021

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Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations

Crop science, 2021-07, Vol.61 (4), p.2243-2253

2021

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A method for partitioning trends in genetic mean and variance to understand breeding practices

Genetics selection evolution (Paris), 2023-06, Vol.55 (1), p.36-36, Article 36

2023

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AlphaPart-R implementation of the method for partitioning genetic trends

Genetics selection evolution (Paris), 2021-03, Vol.53 (1), p.30-30, Article 30

2021

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Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees

Genetics selection evolution (Paris), 2018-12, Vol.50 (1), p.67-67, Article 67

2018

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On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Genetics selection evolution (Paris), 2020-05, Vol.52 (1), p.25-25, Article 25

2020

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Genetic variation in recombination rate in the pig

Genetics selection evolution (Paris), 2021-06, Vol.53 (1), p.1-54, Article 54

2021

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Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding

Frontiers in plant science, 2021-02, Vol.12, p.605172-605172

2021

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Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species

Frontiers in genetics, 2023-05, Vol.14, p.1194266-1194266

2023

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Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing

Genetics selection evolution (Paris), 2018-12, Vol.50 (1), p.64-64, Article 64

2018

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Hierarchical Modelling of Haplotype Effects on a Phylogeny

Frontiers in genetics, 2021-01, Vol.11, p.531218-531218

2021

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A joint learning approach for genomic prediction in polyploid grasses

Scientific reports, 2022-07, Vol.12 (1), p.12499-12499, Article 12499

2022

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Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods

G3 : genes - genomes - genetics, 2012-04, Vol.2 (4), p.425-427

2012

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Combining QTL Analysis and Genomic Predictions for Four Durum Wheat Populations Under Drought Conditions

Frontiers in genetics, 2020-05, Vol.11, p.316-316

2020

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Phenomic and genomic prediction of yield on multiple locations in winter wheat

Frontiers in genetics, 2023-05, Vol.14, p.1164935-1164935

2023

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AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs

Novel combination of CRISPR-based gene drives eliminates resistance and localises spread

Genomic Selection for Any Dairy Breeding Program via Optimized Investment in Phenotyping and Genotyping

Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation

AlphaSimR: an R package for breeding program simulations

Genomic prediction with whole-genome sequence data in intensely selected pig lines

How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding

Assessment of long-term trends in genetic mean and variance after the introduction of genomic selection in layers: a simulation study

Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction

Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds

A gene drive does not spread easily in populations of the honey bee parasite Varroa destructor

Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations

A method for partitioning trends in genetic mean and variance to understand breeding practices

AlphaPart-R implementation of the method for partitioning genetic trends

Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees

On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Genetic variation in recombination rate in the pig

Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding

Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species

Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing

Hierarchical Modelling of Haplotype Effects on a Phylogeny

A joint learning approach for genomic prediction in polyploid grasses

Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods

Combining QTL Analysis and Genomic Predictions for Four Durum Wheat Populations Under Drought Conditions

Phenomic and genomic prediction of yield on multiple locations in winter wheat

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