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Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics

Nature communications, 2021-05, Vol.12 (1), p.2793-10, Article 2793

2021

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E487K-Induced Disorder in Functionally Relevant Dynamics of Mitochondrial Aldehyde Dehydrogenase 2

Biophysical journal, 2020-08, Vol.119 (3), p.628-637

2020

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Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns

Journal of chemical information and modeling, 2020-06, Vol.60 (6), p.2803-2818

2020

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Improvement in predicting drug sensitivity changes associated with protein mutations using a molecular dynamics based alchemical mutation method

Scientific reports, 2020-02, Vol.10 (1), p.2161-2161, Article 2161

2020

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Rotation Mechanism of Molecular Motor V1-ATPase Studied by Multiscale Molecular Dynamics Simulation

Biophysical journal, 2017-03, Vol.112 (5), p.911-920

2017

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Integrated approach to functional analysis of an ERBB2 variant of unknown significance detected by a cancer gene panel test

Cellular oncology (Dordrecht), 2022-02, Vol.45 (1), p.121-134

2022

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LTK mutations responsible for resistance to lorlatinib in non-small cell lung cancer harboring CLIP1-LTK fusion

Communications biology, 2024-04, Vol.7 (1), p.412-412, Article 412

2024

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Structure-Based de Novo Molecular Generator Combined with Artificial Intelligence and Docking Simulations

Journal of chemical information and modeling, 2021-07, Vol.61 (7), p.3304-3313

2021

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Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase

Journal of the American Chemical Society, 2024-10

2024

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Rotation Mechanism of Molecular Motor V 1 -ATPase Studied by Multiscale Molecular Dynamics Simulation

Biophysical journal, 2017-03, Vol.112 (5), p.911

2017

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3P160 MD シミュレーションによるEnterococcus hirae. V_1-ATPase の回転機構の解明(分子モーター,ポスター,第52回日本生物物理学会年会(2014年度))

生物物理, 2014/08/20, Vol.54(supplement1-2), pp.S275

2014

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3P160 Rotation mechanism of V1-ATPase studied by MD simulation(Molecular motor,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S275

2014

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1P144 Course-grained molecular dynamics simulation of V1-ATPase(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S164

2014

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1P144 V1-ATPaseの粗視化分子動力学シミュレーション(11. 分子モーター,ポスター,第52回日本生物物理学会年会(2014年度))

生物物理, 2014/08/20, Vol.54(supplement1-2), pp.S164

2014

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3P165 腸球菌由来V_1ATPaseの軸強制回転シミュレーションによる回転機構の解明(11.分子モーター,ポスター,日本生物物理学会年会第51回(2013年度))

生物物理, 2013/09/13, Vol.53(supplement1-2), pp.S239

2013

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3P165 Rotation mechanism of V_1-ATPase studied by steered MD simulations(11. Molecular motor,Poster)

Seibutsu Butsuri, 2013/09/13, Vol.53(supplement1-2), pp.S239

2013

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Modulation of the Association of Hypobicarbonatemia and Incident Kidney Failure With Replacement Therapy by Venous pH: A Cohort Study

American journal of kidney diseases, 2021-01, Vol.77 (1), p.35-43

2021

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Age and parous-experience dependent changes in emotional contagion for positive infant sounds

Frontiers in psychology, 2024-03, Vol.15, p.1336126-1336126

2024

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Association between urinary uric acid excretion and kidney outcome in patients with CKD

Scientific reports, 2024-03, Vol.14 (1), p.5119-5119, Article 5119

2024

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Association of Time-Updated Anion Gap With Risk of Kidney Failure in Advanced CKD: A Cohort Study

American journal of kidney diseases, 2022-03, Vol.79 (3), p.374-382

2022

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Diagnosing metabolic acidosis in chronic kidney disease: importance of blood pH and serum anion gap

Kidney Research and Clinical Practice, 2022, 41(3), , pp.288-297

2022

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Association of Longitudinal B-Type Natriuretic Peptide Monitoring With Kidney Failure in Patients With CKD: A Cohort Study

American journal of kidney diseases, 2023-11, Vol.82 (5), p.559-568

2023

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Total Replacement of Fish Meal by the Combination of Fish Residue Meal and Soy Protein from Soymilk in the Diet of Red Sea Bream ( Pagrus major )

Animals (Basel), 2022-11, Vol.12 (23), p.3351

2022

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Cyclosporine A Treatment of Proteinuria in a New Case of MAFB-Associated Glomerulopathy without Extrarenal Involvement: A Case Report

Nephron (2015), 2021-07, Vol.145 (4), p.445-450

2021

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Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics

E487K-Induced Disorder in Functionally Relevant Dynamics of Mitochondrial Aldehyde Dehydrogenase 2

Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns

Improvement in predicting drug sensitivity changes associated with protein mutations using a molecular dynamics based alchemical mutation method

Rotation Mechanism of Molecular Motor V1-ATPase Studied by Multiscale Molecular Dynamics Simulation

Integrated approach to functional analysis of an ERBB2 variant of unknown significance detected by a cancer gene panel test

LTK mutations responsible for resistance to lorlatinib in non-small cell lung cancer harboring CLIP1-LTK fusion

Structure-Based de Novo Molecular Generator Combined with Artificial Intelligence and Docking Simulations

Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase

Rotation Mechanism of Molecular Motor V 1 -ATPase Studied by Multiscale Molecular Dynamics Simulation

3P160 MD シミュレーションによるEnterococcus hirae. V_1-ATPase の回転機構の解明(分子モーター,ポスター,第52回日本生物物理学会年会(2014年度))

3P160 Rotation mechanism of V1-ATPase studied by MD simulation(Molecular motor,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

1P144 Course-grained molecular dynamics simulation of V1-ATPase(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

1P144 V1-ATPaseの粗視化分子動力学シミュレーション(11. 分子モーター,ポスター,第52回日本生物物理学会年会(2014年度))

3P165 腸球菌由来V_1ATPaseの軸強制回転シミュレーションによる回転機構の解明(11.分子モーター,ポスター,日本生物物理学会年会第51回(2013年度))

3P165 Rotation mechanism of V_1-ATPase studied by steered MD simulations(11. Molecular motor,Poster)

Modulation of the Association of Hypobicarbonatemia and Incident Kidney Failure With Replacement Therapy by Venous pH: A Cohort Study

Age and parous-experience dependent changes in emotional contagion for positive infant sounds

Association between urinary uric acid excretion and kidney outcome in patients with CKD

Association of Time-Updated Anion Gap With Risk of Kidney Failure in Advanced CKD: A Cohort Study

Diagnosing metabolic acidosis in chronic kidney disease: importance of blood pH and serum anion gap

Association of Longitudinal B-Type Natriuretic Peptide Monitoring With Kidney Failure in Patients With CKD: A Cohort Study

Total Replacement of Fish Meal by the Combination of Fish Residue Meal and Soy Protein from Soymilk in the Diet of Red Sea Bream ( Pagrus major )

Cyclosporine A Treatment of Proteinuria in a New Case of MAFB-Associated Glomerulopathy without Extrarenal Involvement: A Case Report

Segmentectomy versus lobectomy in small-sized peripheral non-small-cell lung cancer with radiologically pure-solid appearance in Japan (JCOG0802/WJOG4607L): a post-hoc supplemental analysis of a multicentre, open-label, phase 3 trial

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