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EBV Noncoding RNA Binds Nascent RNA to Drive Host PAX5 to Viral DNA

Cell, 2015-02, Vol.160 (4), p.607-618

2015

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Probing Xist RNA Structure in Cells Using Targeted Structure-Seq

PLoS genetics, 2015-12, Vol.11 (12), p.e1005668-e1005668

2015

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The Epstein Barr virus circRNAome

PLoS pathogens, 2018-08, Vol.14 (8), p.e1007206

2018

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Viral noncoding RNAs: more surprises

Genes & development, 2015-03, Vol.29 (6), p.567-584

2015

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Design of small molecules targeting RNA structure from sequence

Chemical Society reviews, 2020-10, Vol.49 (2), p.7252-727

2020

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ScanFold: an approach for genome-wide discovery of local RNA structural elements-applications to Zika virus and HIV

PeerJ (San Francisco, CA), 2018-12, Vol.6, p.e6136-e6136, Article e6136

2018

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Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control

PloS one, 2022-02, Vol.17 (2), p.e0264025-e0264025

2022

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Targeting the SARS-CoV‑2 RNA Genome with Small Molecule Binders and Ribonuclease Targeting Chimera (RIBOTAC) Degraders

ACS central science, 2020-10, Vol.6 (10), p.1713-1721

2020

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Identification of MYC intron 2 regions that modulate expression

PloS one, 2024-01, Vol.19 (1), p.e0296889-e0296889

2024

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In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation

Scientific reports, 2022-01, Vol.12 (1), p.310-310, Article 310

2022

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Universal and strain specific structure features of segment 8 genomic RNA of influenza A virus—application of 4-thiouridine photocrosslinking

The Journal of biological chemistry, 2021-12, Vol.297 (6), p.101245, Article 101245

2021

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Identification of potential conserved RNA secondary structure throughout influenza A coding regions

RNA (Cambridge), 2011-06, Vol.17 (6), p.991-1011

2011

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The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology

PloS one, 2019-07, Vol.14 (7), p.e0219210-e0219210

2019

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Analysis of a structured intronic region of the LMP2 pre-mRNA from EBV reveals associations with human regulatory proteins and nuclear actin

BMC research notes, 2019-01, Vol.12 (1), p.33-33, Article 33

2019

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The 3' splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin

PloS one, 2012-06, Vol.7 (6), p.e38323

2012

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RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression

PloS one, 2019-06, Vol.14 (6), p.e0213758-e0213758

2019

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High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project

Journal of virology, 2015-01, Vol.89 (1), p.713-729

2015

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Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome

Scientific reports, 2022-08, Vol.12 (1), p.14515-14515, Article 14515

2022

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Direct interaction of small non-coding RNAs CjNC140 and CjNC110 optimizes expression of key pathogenic phenotypes of Campylobacter jejuni

mBio, 2023-08, Vol.14 (4), p.e0083323-e0083323

2023

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Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus

PloS one, 2016-02, Vol.11 (2), p.e0148281-e0148281

2016

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The ensemble diversity of non-coding RNA structure is lower than random sequence

Non-coding RNA research, 2018-09, Vol.3 (3), p.100-107

Moss, Walter N.

2018

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Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment

International journal of molecular sciences, 2022-02, Vol.23 (5), p.2452

2022

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Structural Context of a Critical Exon of Spinal Muscular Atrophy Gene

Frontiers in molecular biosciences, 2022-07, Vol.9, p.928581-928581

2022

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A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation

PloS one, 2015-10, Vol.10 (10), p.e0141132-e0141132

2015

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ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes

PeerJ (San Francisco, CA), 2022-11, Vol.10, p.e14361, Article e14361

2022

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EBV Noncoding RNA Binds Nascent RNA to Drive Host PAX5 to Viral DNA

Probing Xist RNA Structure in Cells Using Targeted Structure-Seq

The Epstein Barr virus circRNAome

Viral noncoding RNAs: more surprises

Design of small molecules targeting RNA structure from sequence

ScanFold: an approach for genome-wide discovery of local RNA structural elements-applications to Zika virus and HIV

Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control

Targeting the SARS-CoV‑2 RNA Genome with Small Molecule Binders and Ribonuclease Targeting Chimera (RIBOTAC) Degraders

Identification of MYC intron 2 regions that modulate expression

In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation

Universal and strain specific structure features of segment 8 genomic RNA of influenza A virus—application of 4-thiouridine photocrosslinking

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology

Analysis of a structured intronic region of the LMP2 pre-mRNA from EBV reveals associations with human regulatory proteins and nuclear actin

The 3' splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin

RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression

High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project

Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome

Direct interaction of small non-coding RNAs CjNC140 and CjNC110 optimizes expression of key pathogenic phenotypes of Campylobacter jejuni

Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus

The ensemble diversity of non-coding RNA structure is lower than random sequence

Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment

Structural Context of a Critical Exon of Spinal Muscular Atrophy Gene

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation

ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes

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