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Conformational Dynamics of DNA Polymerases Revealed at the Single-Molecule Level

Frontiers in molecular biosciences, 2022-02, Vol.9, p.826593-826593

Millar, David P

2022

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Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics

Nucleic acids research, 2022-01, Vol.50 (2), p.717-730

2022

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Single-molecule view of coordination in a multi-functional DNA polymerase

eLife, 2021-03, Vol.10

2021

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The Spectroscopic Basis of Fluorescence Triple Correlation Spectroscopy

The journal of physical chemistry. B, 2012-02, Vol.116 (6), p.1908-1919

2012

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Formation of trans-activation competent HIV-1 Rev:RRE complexes requires the recruitment of multiple protein activation domains

PloS one, 2012-06, Vol.7 (6), p.e38305-e38305

2012

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Biased Signaling of the G-Protein-Coupled Receptor β2AR Is Governed by Conformational Exchange Kinetics

Structure (London), 2020-03, Vol.28 (3), p.371-377.e3

2020

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DNA polymerase activity at the single-molecule level

Biochemical Society transactions, 2011-04, Vol.39 (2), p.595-599

2011

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Single-molecule Förster resonance energy transfer reveals an innate fidelity checkpoint in DNA polymerase I

Journal of the American Chemical Society, 2012-07, Vol.134 (27), p.11261-11268

2012

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A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev Response Element

Journal of molecular biology, 2017-03, Vol.429 (5), p.697-714

2017

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A Survey of DDX21 Activity During Rev/RRE Complex Formation

Journal of molecular biology, 2018-02, Vol.430 (4), p.537-553

2018

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Discrimination between Functional and Non-functional Cellular Gag Complexes involved in HIV-1 Assembly

Journal of molecular biology, 2021-04, Vol.433 (8), p.166842-166842, Article 166842

2021

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Dynamics of Site Switching in DNA Polymerase

Journal of the American Chemical Society, 2013-03, Vol.135 (12), p.4735-4742

2013

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FRET Characterization of Complex Conformational Changes in a Large 16S Ribosomal RNA Fragment Site-Specifically Labeled Using Unnatural Base Pairs

ACS chemical biology, 2016-05, Vol.11 (5), p.1347-1353

2016

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Editorial overview --New frontiers of biophysical methods: Tools for structural biology and beyond

Current opinion in structural biology, 2014-10, Vol.28, p.viii-x

2014

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A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly

Nucleic acids research, 2017-05, Vol.45 (8), p.4632-4641

2017

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O-Glycoside Orientation Is an Essential Aspect of Base J Recognition by the Kinetoplastid DNA-Binding Protein JBP1

Angewandte Chemie (International ed.), 2007-01, Vol.46 (16), p.2839-2843

2007

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Single-Molecule Studies Reveal that DEAD Box Protein DDX1 Promotes Oligomerization of HIV-1 Rev on the Rev Response Element

Journal of molecular biology, 2011-07, Vol.410 (5), p.959-971

2011

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Coupling of Hydrogen Bonding to Chromophore Conformation and Function in Photoactive Yellow Protein

Biochemistry (Easton), 2000-11, Vol.39 (44), p.13478-13486

2000

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Time-resolved fluorescence resonance energy transfer: A versatile tool for the analysis of nucleic acids

Biopolymers, 2002, Vol.61 (3), p.159-179

2002

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Solvent-Dependent Photoinduced Tautomerization of 2-(2‘-Hydroxyphenyl)benzoxazole

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2002-04, Vol.106 (15), p.3665-3672

2002

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Resonance Energy-Transfer Studies of the Conformational Change on the Adsorption of Oligonucleotides to a Silica Interface

The journal of physical chemistry. B, 2011-05, Vol.115 (19), p.6329-6339

2011

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Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy

Computer physics communications, 2013-04, Vol.184 (4), p.1322-1332

2013

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Probing the Dynamics of the P1 Helix within the Tetrahymena Group I Intron

Journal of the American Chemical Society, 2009-07, Vol.131 (27), p.9571-9578

2009

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Inter-rater agreement, sensitivity, and specificity of the prone hip extension test and active straight leg raise test

Chiropractic & manual therapies, 2014-06, Vol.22 (1), p.23-23, Article 23

2014

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Fluorophore–quencher pair for monitoring protein motion

Biochemical and biophysical research communications, 2009-03, Vol.380 (2), p.277-280

2009

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Conformational Dynamics of DNA Polymerases Revealed at the Single-Molecule Level

Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics

Single-molecule view of coordination in a multi-functional DNA polymerase

The Spectroscopic Basis of Fluorescence Triple Correlation Spectroscopy

Formation of trans-activation competent HIV-1 Rev:RRE complexes requires the recruitment of multiple protein activation domains

Biased Signaling of the G-Protein-Coupled Receptor β2AR Is Governed by Conformational Exchange Kinetics

DNA polymerase activity at the single-molecule level

Single-molecule Förster resonance energy transfer reveals an innate fidelity checkpoint in DNA polymerase I

A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev Response Element

A Survey of DDX21 Activity During Rev/RRE Complex Formation

Discrimination between Functional and Non-functional Cellular Gag Complexes involved in HIV-1 Assembly

Dynamics of Site Switching in DNA Polymerase

FRET Characterization of Complex Conformational Changes in a Large 16S Ribosomal RNA Fragment Site-Specifically Labeled Using Unnatural Base Pairs

Editorial overview --New frontiers of biophysical methods: Tools for structural biology and beyond

A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly

O-Glycoside Orientation Is an Essential Aspect of Base J Recognition by the Kinetoplastid DNA-Binding Protein JBP1

Single-Molecule Studies Reveal that DEAD Box Protein DDX1 Promotes Oligomerization of HIV-1 Rev on the Rev Response Element

Coupling of Hydrogen Bonding to Chromophore Conformation and Function in Photoactive Yellow Protein

Time-resolved fluorescence resonance energy transfer: A versatile tool for the analysis of nucleic acids

Solvent-Dependent Photoinduced Tautomerization of 2-(2‘-Hydroxyphenyl)benzoxazole

Resonance Energy-Transfer Studies of the Conformational Change on the Adsorption of Oligonucleotides to a Silica Interface

Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy

Probing the Dynamics of the P1 Helix within the Tetrahymena Group I Intron

Inter-rater agreement, sensitivity, and specificity of the prone hip extension test and active straight leg raise test

Fluorophore–quencher pair for monitoring protein motion

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