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Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations

Molecules (Basel, Switzerland), 2019-07, Vol.24 (14), p.2557

2019

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Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example

The Journal of chemical physics, 2018-03, Vol.148 (12), p.123315-123315

2018

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FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

PloS one, 2016-08, Vol.11 (8), p.e0160716-e0160716

2016

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Multi-parameter photon-by-photon hidden Markov modeling

Nature communications, 2022-02, Vol.13 (1), p.1000-1000, Article 1000

2022

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Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments

Biophysical reports, 2022-09, Vol.2 (3), p.100071, Article 100071

2022

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Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Scientific reports, 2016-09, Vol.6 (1), p.33257-33257, Article 33257

2016

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Evidence for a compact σ70 conformation in vitro and in vivo

iScience, 2024-06, Vol.27 (6), p.110140, Article 110140

2024

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Fluorescent protein lifetimes report densities and phases of nuclear condensates during embryonic stem-cell differentiation

Nature communications, 2023-08, Vol.14 (1), p.4885-4885, Article 4885

2023

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Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules

PloS one, 2017-04, Vol.12 (4), p.e0175766-e0175766

2017

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Fretsael microscopy—localizing biomolecular interactions at nanometer accuracy using confocal microscopy and simple dyes

Biophysical journal, 2024-02, Vol.123 (3), p.30a-30a

2024

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Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Journal of visualized experiments, 2021-05 (171)

2021

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Different types of pausing modes during transcription initiation

Transcription, 2017-08, Vol.8 (4), p.242-253

2017

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Correction to “Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET”

The journal of physical chemistry. B, 2023-01, Vol.127 (3), p.807-807

2023

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Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET

The journal of physical chemistry. B, 2018-12, Vol.122 (49), p.11598-11615

2018

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The influence of PEG crowding on mCherry dynamics, disorder, and structure

Biophysical journal, 2024-02, Vol.123 (3), p.193a-193a

2024

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A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET)

The journal of physical chemistry. B, 2016-07, Vol.120 (26), p.6401-6410

2016

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Disentangling conformational and photophysical dynamics in single-molecule FRET and PIFE experiments with multiparameter photon-by-photon hidden Markov modeling

Biophysical journal, 2024-02, Vol.123 (3), p.287a-287a

2024

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The structural heterogeneity of α-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds

Structure (London), 2021-09, Vol.29 (9), p.1048-1064.e6

2021

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Multifunctions of α‐Synuclein Explained by Its Dynamic Heterogeneous Conformations with a Hierarchy of Transition Times

The FASEB journal, 2022-05, Vol.36 (S1), p.n/a

2022

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Structure-function relationship of an unstructured protein: α-synuclein

Biophysical journal, 2022-02, Vol.121 (3), p.40a-40a

2022

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Structural and dynamic insights into α-synuclein dimer conformations

Structure (London), 2023-04, Vol.31 (4), p.411-423.e6

2023

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A novel single molecule fluorescence quenching technique for measuring distances below 3 nm

Biophysical journal, 2022-02, Vol.121 (3), p.431a-431a

2022

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The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase

Nucleic acids research, 2019-02, Vol.47 (3), p.1440

2019

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Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

Nature methods, 2023-04, Vol.20 (4), p.523

2023

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High-throughput smFRET analysis of freely diffusing nucleic acid molecules and associated proteins

Methods (San Diego, Calif.), 2019-10, Vol.169, p.21-45

2019

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Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations

Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

Multi-parameter photon-by-photon hidden Markov modeling

Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Evidence for a compact σ70 conformation in vitro and in vivo

Fluorescent protein lifetimes report densities and phases of nuclear condensates during embryonic stem-cell differentiation

Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules

Fretsael microscopy—localizing biomolecular interactions at nanometer accuracy using confocal microscopy and simple dyes

Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Different types of pausing modes during transcription initiation

Correction to “Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET”

Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET

The influence of PEG crowding on mCherry dynamics, disorder, and structure

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET)

Disentangling conformational and photophysical dynamics in single-molecule FRET and PIFE experiments with multiparameter photon-by-photon hidden Markov modeling

The structural heterogeneity of α-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds

Multifunctions of α‐Synuclein Explained by Its Dynamic Heterogeneous Conformations with a Hierarchy of Transition Times

Structure-function relationship of an unstructured protein: α-synuclein

Structural and dynamic insights into α-synuclein dimer conformations

A novel single molecule fluorescence quenching technique for measuring distances below 3 nm

The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

High-throughput smFRET analysis of freely diffusing nucleic acid molecules and associated proteins

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