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The blood DNA virome in 8,000 humans

PLoS pathogens, 2017-03, Vol.13 (3), p.e1006292-e1006292

2017

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Unfixed endogenous retroviral insertions in the human population

Journal of virology, 2014-09, Vol.88 (17), p.9529-9537

2014

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Viral Mutation Rates

Journal of Virology, 2010-10, Vol.84 (19), p.9733-9748

2010

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Integrated genomic approaches identify major pathways and upstream regulators in late onset Alzheimer’s disease

Scientific reports, 2015-07, Vol.5 (1), p.12393-12393, Article 12393

2015

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Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints

PLoS pathogens, 2021-07, Vol.17 (7), p.e1009744-e1009744

2021

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Detecting remote sequence homology in disordered proteins: discovery of conserved motifs in the N-termini of Mononegavirales phosphoproteins

PloS one, 2012-03, Vol.7 (3), p.e31719

2012

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Features that matter: Evolutionary signatures can predict viral transmission routes

PLoS pathogens, 2024-10, Vol.20 (10), p.e1012629

2024

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BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations

BMC bioinformatics, 2022-04, Vol.23 (1), p.134-134, Article 134

2022

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Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes

PloS one, 2018-10, Vol.13 (10), p.e0202513

2018

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The transmembrane protein of the human endogenous retrovirus--K (HERV-K) modulates cytokine release and gene expression

PloS one, 2013-08, Vol.8 (8), p.e70399

2013

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Human Endogenous Retrovirus Type K Promotes Proliferation and Confers Sensitivity to Antiretroviral Drugs in Merlin-Negative Schwannoma and Meningioma

Cancer research (Chicago, Ill.), 2022-01, Vol.82 (2), p.235-247

2022

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Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin

PloS one, 2010-01, Vol.5 (1), p.e8553-e8553

2010

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Dating the origin and dispersal of hepatitis B virus infection in humans and primates

Hepatology (Baltimore, Md.), 2013-03, Vol.57 (3), p.908-916

2013

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Scrutinizing virus genome termini by high-throughput sequencing

PloS one, 2014-01, Vol.9 (1), p.e85806-e85806

2014

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Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages

PLoS pathogens, 2015-11, Vol.11 (11), p.e1005279-e1005279

2015

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Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer

PloS one, 2019-04, Vol.14 (4), p.e0213770-e0213770

2019

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EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes

PloS one, 2017-05, Vol.12 (5), p.e0177119-e0177119

2017

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The evolution of genome compression and genomic novelty in RNA viruses

Genome Research, 2007-10, Vol.17 (10), p.1496-1504

2007

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An RNA-Seq analysis of coronavirus in the skin of the Pangolin

Scientific reports, 2024-01, Vol.14 (1), p.910-910, Article 910

2024

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Mutational pathway maps and founder effects define the within-host spectrum of hepatitis C virus mutants resistant to drugs

PLoS pathogens, 2019-04, Vol.15 (4), p.e1007701-e1007701

2019

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Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin

PLoS pathogens, 2018-10, Vol.14 (10), p.e1007377-e1007377

2018

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Discovery of Novel Biomarkers for Alzheimer’s Disease from Blood

Disease markers, 2016-01, Vol.2016 (2016), p.1-9

2016

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Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera)

PloS one, 2013-09, Vol.8 (9), p.e74508-e74508

2013

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Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam

PLoS pathogens, 2014-08, Vol.10 (8), p.e1004310-e1004310

2014

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Cytosolic RNA:DNA Duplexes Generated by Endogenous Reverse Transcriptase Activity as Autonomous Inducers of Skin Inflammation in Psoriasis

PloS one, 2017-01, Vol.12 (1), p.e0169879-e0169879

2017

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The blood DNA virome in 8,000 humans

Unfixed endogenous retroviral insertions in the human population

Viral Mutation Rates

Integrated genomic approaches identify major pathways and upstream regulators in late onset Alzheimer’s disease

Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints

Detecting remote sequence homology in disordered proteins: discovery of conserved motifs in the N-termini of Mononegavirales phosphoproteins

Features that matter: Evolutionary signatures can predict viral transmission routes

BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations

Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes

The transmembrane protein of the human endogenous retrovirus--K (HERV-K) modulates cytokine release and gene expression

Human Endogenous Retrovirus Type K Promotes Proliferation and Confers Sensitivity to Antiretroviral Drugs in Merlin-Negative Schwannoma and Meningioma

Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin

Dating the origin and dispersal of hepatitis B virus infection in humans and primates

Scrutinizing virus genome termini by high-throughput sequencing

Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages

Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer

EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes

The evolution of genome compression and genomic novelty in RNA viruses

An RNA-Seq analysis of coronavirus in the skin of the Pangolin

Mutational pathway maps and founder effects define the within-host spectrum of hepatitis C virus mutants resistant to drugs

Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin

Discovery of Novel Biomarkers for Alzheimer’s Disease from Blood

Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera)

Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam

Cytosolic RNA:DNA Duplexes Generated by Endogenous Reverse Transcriptase Activity as Autonomous Inducers of Skin Inflammation in Psoriasis

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