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Forecasting Pathogen Dynamics with Bayesian Model-Averaging: Application to Xylella fastidiosa

Bulletin of mathematical biology, 2023-07, Vol.85 (7), p.67-67, Article 67

2023

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A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data

Proceedings of the Royal Society. B, Biological sciences, 2014-05, Vol.281 (1782), p.20133251

2014

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Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

Biology (Basel, Switzerland), 2020-05, Vol.9 (5), p.97

2020

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Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

Frontiers in microbiology, 2022-10, Vol.13 (983938), p.983938-983938

2022

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Parameter estimation for reaction-diffusion models of biological invasions

Population ecology, 2014-04, Vol.56 (2), p.427-434

2014

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Sharka Epidemiology and Worldwide Management Strategies: Learning Lessons to Optimize Disease Control in Perennial Plants

Annual review of phytopathology, 2015-01, Vol.53 (1), p.357-378

2015

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Assessing the Mismatch Between Incubation and Latent Periods for Vector-Borne Diseases: The Case of Sharka

Phytopathology, 2015-11, Vol.105 (11), p.1408-1416

2015

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Impact of Lockdown on the Epidemic Dynamics of COVID-19 in France

Frontiers in medicine, 2020-06, Vol.7, p.274-274

2020

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Towards unified and real-time analyses of outbreaks at country-level during pandemics

One health, 2020-12, Vol.11, p.100187-100187, Article 100187

2020

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Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes

Annual review of phytopathology, 2017-08, Vol.55, p.139

2017

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Identifying Lookouts for Epidemio-Surveillance: Application to the Emergence of Xylella fastidiosa in France

Phytopathology, 2019-02, Vol.109 (2), p.265-276

2019

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Quick inference for log Gaussian Cox processes with non-stationary underlying random fields

Spatial statistics, 2019-10, Vol.33, p.100388, Article 100388

2019

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Rearranging agricultural landscapes towards habitat quality optimisation: In silico application to pest regulation

Ecological complexity, 2016-12, Vol.28, p.113-122

2016

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Mapping Rainfall Feedback to Reveal the Potential Sensitivity of Precipitation to Biological Aerosols

Bulletin of the American Meteorological Society, 2017-06, Vol.98 (6), p.1109-1118

2017

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Evolution of dispersal in asexual populations: to be independent, clumped or grouped?

Evolutionary ecology, 2015-11, Vol.29 (6), p.947-963

2015

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The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus

Infection, genetics and evolution, 2015-06, Vol.32, p.440-448

2015

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Using sensitivity analysis to identify key factors for the propagation of a plant epidemic

Royal Society open science, 2018-01, Vol.5 (1), p.171435-171435

2018

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Identifying potential significant factors impacting zero‐inflated proportion data

Statistics in medicine, 2023-08, Vol.42 (19), p.3467-3486

2023

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Accounting for roughness of circular processes: Using Gaussian random processes to model the anisotropic spread of airborne plant disease

Theoretical population biology, 2008-02, Vol.73 (1), p.92-103

2008

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Dating and localizing an invasion from post-introduction data and a coupled reaction–diffusion–absorption model

Journal of mathematical biology, 2019-07, Vol.79 (2), p.765-789

2019

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Spatial statistics and stochastic partial differential equations: A mechanistic viewpoint

Spatial statistics, 2022-08, Vol.50, p.100591, Article 100591

2022

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Weak convergence of posteriors conditional on maximum pseudo-likelihood estimates and implications in ABC

Statistics & probability letters, 2015-12, Vol.107, p.84-92

2015

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Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2019-06, Vol.374 (1775), p.20180258

2019

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Correction: Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

PLoS computational biology, 2021-08, Vol.17 (8)

2021

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COVID-19 mortality dynamics: The future modelled as a

PloS one, 2020-09, Vol.15 (9), p.e0238410

2020

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Forecasting Pathogen Dynamics with Bayesian Model-Averaging: Application to Xylella fastidiosa

A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data

Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

Characterizing viral within-host diversity in fast and non-equilibrium demo-genetic dynamics

Parameter estimation for reaction-diffusion models of biological invasions

Sharka Epidemiology and Worldwide Management Strategies: Learning Lessons to Optimize Disease Control in Perennial Plants

Assessing the Mismatch Between Incubation and Latent Periods for Vector-Borne Diseases: The Case of Sharka

Impact of Lockdown on the Epidemic Dynamics of COVID-19 in France

Towards unified and real-time analyses of outbreaks at country-level during pandemics

Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes

Identifying Lookouts for Epidemio-Surveillance: Application to the Emergence of Xylella fastidiosa in France

Quick inference for log Gaussian Cox processes with non-stationary underlying random fields

Rearranging agricultural landscapes towards habitat quality optimisation: In silico application to pest regulation

Mapping Rainfall Feedback to Reveal the Potential Sensitivity of Precipitation to Biological Aerosols

Evolution of dispersal in asexual populations: to be independent, clumped or grouped?

The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus

Using sensitivity analysis to identify key factors for the propagation of a plant epidemic

Identifying potential significant factors impacting zero‐inflated proportion data

Accounting for roughness of circular processes: Using Gaussian random processes to model the anisotropic spread of airborne plant disease

Dating and localizing an invasion from post-introduction data and a coupled reaction–diffusion–absorption model

Spatial statistics and stochastic partial differential equations: A mechanistic viewpoint

Weak convergence of posteriors conditional on maximum pseudo-likelihood estimates and implications in ABC

Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases

Correction: Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

COVID-19 mortality dynamics: The future modelled as a

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