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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Molecular biology and evolution, 2018-10, Vol.35 (10), p.2582-2584

2018

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Origin and Diversity of Plant Receptor-Like Kinases

Annual review of plant biology, 2020-04, Vol.71 (1), p.131-156

2020

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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

Molecular biology and evolution, 2013-09, Vol.30 (9), p.2134-2144

2013

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GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome

Plant methods, 2024-07, Vol.20 (1), p.103-19, Article 103

2024

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Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

Nucleic acids research, 2012-10, Vol.40 (18), p.9102-9114

2012

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Pitfalls in supermatrix phylogenomics

European journal of taxonomy, 2017-02, Vol.283 (283), p.1-25

2017

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Pervasive hybridizations in the history of wheat relatives

Science advances, 2019-05, Vol.5 (5), p.eaav9188

2019

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Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

Ecology and evolution, 2022-01, Vol.12 (1), p.e8555-n/a

2022

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Insights into the evolution, virulence and speciation of Babesia MO1 and Babesia divergens through multiomics analyses

Emerging microbes & infections, 2024-12, Vol.13 (1), p.2386136

2024

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Multiple molecular evidences for a living mammalian fossil

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (18), p.7495-7499

2007

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Is diversity optimization always suitable? Toward a better understanding of diversity within recommendation approaches

Information processing & management, 2021-11, Vol.58 (6), p.102721, Article 102721

2021

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Post-hoc recommendation explanations through an efficient exploitation of the DBpedia category hierarchy

Knowledge-based systems, 2022-06, Vol.245, p.108560, Article 108560

2022

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Aligning Protein-Coding Nucleotide Sequences with MACSE

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2231, p.51

2021

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Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

Molecular ecology, 2012-09, Vol.12 (5), p.834-845

2012

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OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Molecular biology and evolution, 2019-04, Vol.36 (4), p.861-862

2019

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Enseignement et recherche - Au cœur de #DigitAg, l’Institut Convergences Agriculture Numérique, une Graduate School innovante

Sciences eaux & territoires la revue du Cemagref, 2019-08, Vol.2019 (29), p.58-61

2019

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Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

Genome research, 2010-08, Vol.20 (8), p.1001-1009

2010

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Models, algorithms and programs for phylogeny reconciliation

Briefings in bioinformatics, 2011-09, Vol.12 (5), p.392-400

2011

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An information theoretic approach to improve semantic similarity assessments across multiple ontologies

Information sciences, 2014-11, Vol.283, p.197-210

2014

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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Journal of theoretical biology, 2017-11, Vol.432, p.1-13

2017

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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Nucleic acids research, 2024-01, Vol.52 (D1), p.D529-D535

2024

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OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

Molecular biology and evolution, 2014-07, Vol.31 (7), p.1923-1928

2014

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The genetic map comparator: a user-friendly application to display and compare genetic maps

Bioinformatics (Oxford, England), 2017-05, Vol.33 (9), p.1387-1388

2017

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EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

PloS one, 2021-01, Vol.16 (8), p.e0255929

2021

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Genomic evidence for large, long-lived ancestors to placental mammals

Molecular biology and evolution, 2013-01, Vol.30 (1), p.5-13

2013

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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Origin and Diversity of Plant Receptor-Like Kinases

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

Pitfalls in supermatrix phylogenomics

Pervasive hybridizations in the history of wheat relatives

Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

Insights into the evolution, virulence and speciation of Babesia MO1 and Babesia divergens through multiomics analyses

Multiple molecular evidences for a living mammalian fossil

Is diversity optimization always suitable? Toward a better understanding of diversity within recommendation approaches

Post-hoc recommendation explanations through an efficient exploitation of the DBpedia category hierarchy

Aligning Protein-Coding Nucleotide Sequences with MACSE

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Enseignement et recherche - Au cœur de #DigitAg, l’Institut Convergences Agriculture Numérique, une Graduate School innovante

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

Models, algorithms and programs for phylogeny reconciliation

An information theoretic approach to improve semantic similarity assessments across multiple ontologies

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

The genetic map comparator: a user-friendly application to display and compare genetic maps

EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

Genomic evidence for large, long-lived ancestors to placental mammals

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