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SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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Immunological history governs human stem cell memory CD4 heterogeneity via the Wnt signaling pathway

Nature communications, 2020-02, Vol.11 (1), p.821-17, Article 821

2020

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The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men

Clinical and translational gastroenterology, 2021-08, Vol.12 (8), p.e00338-e00338

2021

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Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

Nature communications, 2023-01, Vol.14 (1), p.296-296, Article 296

2023

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Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients

Nature communications, 2023-04, Vol.14 (1), p.2102-2102, Article 2102

2023

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Composition, Spatial Characteristics, and Prognostic Significance of Myeloid Cell Infiltration in Pancreatic Cancer

Clinical cancer research, 2021-02, Vol.27 (4), p.1069-1081

2021

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The Prognostic Role of Macrophage Polarization in the Colorectal Cancer Microenvironment

Cancer immunology research, 2021-01, Vol.9 (1), p.8-19

2021

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Prognostic Significance of Immune Cell Populations Identified by Machine Learning in Colorectal Cancer Using Routine Hematoxylin and Eosin-Stained Sections

Clinical cancer research, 2020-08, Vol.26 (16), p.4326-4338

2020

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Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer

Cancer Immunology, Immunotherapy, 2022-04, Vol.71 (4), p.933-942

2022

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Early Triple-Negative Breast Cancers in a Singapore Cohort Exhibit High PIK3CA Mutation Rates Associated With Low PD-L1 Expression

Modern pathology, 2023-04, Vol.36 (4), p.100056-100056, Article 100056

2023

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Author Correction: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

Nature communications, 2023-10, Vol.14 (1), p.6585-6585, Article 6585

2023

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Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer

The Journal of pathology, 2020-04, Vol.250 (4), p.397-408

2020

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Application of Artificial Intelligence to In Vitro Tumor Modeling and Characterization of the Tumor Microenvironment

Advanced healthcare materials, 2023-06, Vol.12 (14), p.e2202457-n/a

2023

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Metabolic Profiling of Formalin-Fixed Paraffin-Embedded Tissues Discriminates Normal Colon from Colorectal Cancer

Molecular cancer research, 2020-06, Vol.18 (6), p.883-890

2020

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Smoking and Incidence of Colorectal Cancer Subclassified by Tumor-Associated Macrophage Infiltrates

JNCI : Journal of the National Cancer Institute, 2022-01, Vol.114 (1), p.68-77

2022

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An integrated analysis of lymphocytic reaction, tumour molecular characteristics and patient survival in colorectal cancer

British journal of cancer, 2020-04, Vol.122 (9), p.1367-1377

2020

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Training immunophenotyping deep learning models with the same-section ground truth cell label derivation method improves virtual staining accuracy

Frontiers in immunology, 2024-06, Vol.15, p.1404640

2024

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Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer Microenvironment

Cancer immunology research, 2022-02, Vol.10 (2), p.215-227

2022

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Association of PIK3CA mutation and PTEN loss with expression of CD274 (PD-L1) in colorectal carcinoma

Oncoimmunology, 2021-01, Vol.10 (1), p.1956173-1956173

2021

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Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data

NPJ precision oncology, 2023-06, Vol.7 (1), p.57-57, Article 57

2023

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Smoking Status at Diagnosis and Colorectal Cancer Prognosis According to Tumor Lymphocytic Reaction

JNCI cancer spectrum, 2020-10, Vol.4 (5), p.pkaa040-pkaa040

2020

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CD27hiCD38hi plasmablasts are activated B cells of mixed origin with distinct function

iScience, 2021-05, Vol.24 (5), p.102482-102482, Article 102482

2021

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A Graphic Processing Unit (GPU) Algorithm for Improved Variable Selection in Multivariate Process Monitoring

Computer Aided Chemical Engineering, 2012, Vol.31, p.1532-1536

2012

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Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

Clinical cancer research, 2021-05, Vol.27 (10), p.2816-2826

2021

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SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes

Immunological history governs human stem cell memory CD4 heterogeneity via the Wnt signaling pathway

The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men

Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients

Composition, Spatial Characteristics, and Prognostic Significance of Myeloid Cell Infiltration in Pancreatic Cancer

The Prognostic Role of Macrophage Polarization in the Colorectal Cancer Microenvironment

Prognostic Significance of Immune Cell Populations Identified by Machine Learning in Colorectal Cancer Using Routine Hematoxylin and Eosin-Stained Sections

Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer

Integrative multiomics enhancer activity profiling identifies therapeutic vulnerabilities in cholangiocarcinoma of different etiologies

Early Triple-Negative Breast Cancers in a Singapore Cohort Exhibit High PIK3CA Mutation Rates Associated With Low PD-L1 Expression

Author Correction: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer

Application of Artificial Intelligence to In Vitro Tumor Modeling and Characterization of the Tumor Microenvironment

Metabolic Profiling of Formalin-Fixed Paraffin-Embedded Tissues Discriminates Normal Colon from Colorectal Cancer

Smoking and Incidence of Colorectal Cancer Subclassified by Tumor-Associated Macrophage Infiltrates

An integrated analysis of lymphocytic reaction, tumour molecular characteristics and patient survival in colorectal cancer

Training immunophenotyping deep learning models with the same-section ground truth cell label derivation method improves virtual staining accuracy

Spatial Organization and Prognostic Significance of NK and NKT-like Cells via Multimarker Analysis of the Colorectal Cancer Microenvironment

Association of PIK3CA mutation and PTEN loss with expression of CD274 (PD-L1) in colorectal carcinoma

Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data

Smoking Status at Diagnosis and Colorectal Cancer Prognosis According to Tumor Lymphocytic Reaction

CD27hiCD38hi plasmablasts are activated B cells of mixed origin with distinct function

A Graphic Processing Unit (GPU) Algorithm for Improved Variable Selection in Multivariate Process Monitoring

Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment

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